BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0511700 Os05g0511700|AK063707
         (260 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0511700  Putative rRNA methylase family protein              373   e-103

>Os05g0511700 Putative rRNA methylase family protein
          Length = 260

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/260 (73%), Positives = 190/260 (73%)

Query: 1   MPPPPHAAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MPPPPHAAF                                                   
Sbjct: 1   MPPPPHAAFLLRSRGLLPPLLRRSPSSGPPPPLLRPTRQRRGLSVRASAAELAAGVAGVE 60

Query: 61  XXXXGFVTGKRKATELAHAVWRSIVRKGDTVVDATCGNGNDTFAMLKMVADERVQGRVYG 120
               GFVTGKRKATELAHAVWRSIVRKGDTVVDATCGNGNDTFAMLKMVADERVQGRVYG
Sbjct: 61  DAVVGFVTGKRKATELAHAVWRSIVRKGDTVVDATCGNGNDTFAMLKMVADERVQGRVYG 120

Query: 121 LDIQESAIASTSSFLKMAVNSHELELVKLFTICHSRMEEVVPKDFPVRLVAFNLGYLPGG 180
           LDIQESAIASTSSFLKMAVNSHELELVKLFTICHSRMEEVVPKDFPVRLVAFNLGYLPGG
Sbjct: 121 LDIQESAIASTSSFLKMAVNSHELELVKLFTICHSRMEEVVPKDFPVRLVAFNLGYLPGG 180

Query: 181 DKTIITVPKTTELALQXXXXXXXXXXXXXXXVYIGHPGGRDELDVVESFASSLPIDTWMS 240
           DKTIITVPKTTELALQ               VYIGHPGGRDELDVVESFASSLPIDTWMS
Sbjct: 181 DKTIITVPKTTELALQAASSIVSSGGLISVLVYIGHPGGRDELDVVESFASSLPIDTWMS 240

Query: 241 CKFEMLNRPAAPVLILLYKK 260
           CKFEMLNRPAAPVLILLYKK
Sbjct: 241 CKFEMLNRPAAPVLILLYKK 260



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,102,696
Number of extensions: 230804
Number of successful extensions: 419
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)