Os05g0511700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative rRNA methylase family protein.
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Os05g0511700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative rRNA methylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.42 | 0.31 | 11.8 | -1.07 | 1.35 | 0.504 | 0.695 | -0.378 | -0.794 | 7.88 | 10 | 1429 | -- | -- |
| 43.67 | 0.308 | 11.8 | -1.03 | 1.33 | 0.508 | 0.706 | -- | -0.788 | 7.91 | 10 | 1429 | -- | -- |
| 44.81 | 0.312 | 11.8 | -1.07 | 1.35 | 0.495 | -- | -0.414 | -0.79 | 7.83 | 10.01 | 1424 | -- | -- |
| 45.08 | 0.313 | 11.8 | -1.01 | 1.34 | 0.486 | -- | -- | -0.774 | 7.83 | 10.01 | 1436 | -- | -- |
| 118.21 | 0.509 | 11.8 | -0.81 | -- | 0.522 | -- | 0.334 | -0.631 | -- | 2.351 | 1515 | -- | -- |
| 50.63 | 0.334 | 11.7 | -0.857 | 1.34 | -- | 0.665 | -- | -0.624 | 7.8 | -- | -- | -- | -- |
| 51.89 | 0.337 | 11.7 | -0.841 | 1.35 | -- | -- | -- | -0.625 | 7.76 | -- | -- | -- | -- |
| 118.93 | 0.51 | 11.8 | -0.811 | -- | 0.524 | -- | -- | -0.632 | -- | 2.351 | 1515 | -- | -- |
| 66 | 0.378 | 11.7 | -- | 1.36 | 0.375 | -- | -- | -0.608 | 7.78 | 19.99 | 1502 | -- | -- |
| 149.72 | 0.572 | 11.8 | -0.824 | -- | -- | -- | -- | -0.606 | -- | -- | -- | -- | -- |
| 70.52 | 0.393 | 11.7 | -- | 1.34 | -- | -- | -- | -0.531 | 7.8 | -- | -- | -- | -- |
| 130.45 | 0.534 | 11.7 | -- | -- | 0.584 | -- | -- | -0.519 | -- | 4.84 | 1526 | -- | -- |
| 167.64 | 0.604 | 11.7 | -- | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 39.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 39.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 5 | 39.94 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 7 | 40.08 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 20 | 40.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 21 | 40.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 38 | 40.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 47 | 41.08 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 80 | 41.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 92 | 41.74 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 115 | 41.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 118 | 41.98 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 125 | 42.10 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 131 | 42.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 138 | 42.19 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 142 | 42.20 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 145 | 42.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 152 | 42.31 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 183 | 42.45 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 184 | 42.46 | radiation | 1.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 208 | 42.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 237 | 42.56 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 256 | 42.59 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 279 | 42.67 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 298 | 42.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 336 | 42.73 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 363 | 42.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 373 | 42.78 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 451 | 42.84 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 540 | 42.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 619 | 43.06 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 673 | 43.12 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 717 | 43.19 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 737 | 43.21 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 758 | 43.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 777 | 43.25 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 805 | 43.26 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 810 | 43.27 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 857 | 43.30 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 969 | 43.41 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 974 | 43.42 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 980 | 43.43 | humidity | 80.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 991 | 43.44 | humidity | 80.0 | 14400 | > th | dose independent | sin | 15 | NA |