BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0499100 Os05g0499100|X63990
         (186 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0499100  26 kDa globulin (Alpha-globulin)                    242   1e-64
L12252                                                            238   2e-63

>Os05g0499100 26 kDa globulin (Alpha-globulin)
          Length = 186

 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/186 (70%), Positives = 132/186 (70%)

Query: 1   MASKXXXXXXXXXXXXXXISGAQLSESEMRFRDRQCQREVQDSPLDACRQVLDRQLTGRE 60
           MASK              ISGAQLSESEMRFRDRQCQREVQDSPLDACRQVLDRQLTGRE
Sbjct: 1   MASKVVFFAAALMAAMVAISGAQLSESEMRFRDRQCQREVQDSPLDACRQVLDRQLTGRE 60

Query: 61  RFQPMFRRPGALGLRMQCCQQLQDVSRECRCAAIRRMVRSYEESMPMPLXXXXXXXXXXX 120
           RFQPMFRRPGALGLRMQCCQQLQDVSRECRCAAIRRMVRSYEESMPMPL           
Sbjct: 61  RFQPMFRRPGALGLRMQCCQQLQDVSRECRCAAIRRMVRSYEESMPMPLEQGWSSSSSEY 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGMTRVRLTRARQYAAQLPSMCRVEPQQCSI 180
                                        PGMTRVRLTRARQYAAQLPSMCRVEPQQCSI
Sbjct: 121 YGGEGSSSEQGYYGEGSSEEGYYGEQQQQPGMTRVRLTRARQYAAQLPSMCRVEPQQCSI 180

Query: 181 FAAGQY 186
           FAAGQY
Sbjct: 181 FAAGQY 186



>L12252 
          Length = 174

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 127/168 (75%)

Query: 19  ISGAQLSESEMRFRDRQCQREVQDSPLDACRQVLDRQLTGRERFQPMFRRPGALGLRMQC 78
           ISGA +SESEMRFRDRQCQREVQDSPLDACRQVLDRQLTGRERFQPMFRRPGALGLRMQC
Sbjct: 7   ISGAHVSESEMRFRDRQCQREVQDSPLDACRQVLDRQLTGRERFQPMFRRPGALGLRMQC 66

Query: 79  CQQLQDVSRECRCAAIRRMVRSYEESMPMPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 138
           CQQLQDVSRECRCAAIRRMVRSYEESMPMPL                             
Sbjct: 67  CQQLQDVSRECRCAAIRRMVRSYEESMPMPLEQGWSSSSSEYYGGEGSSSEQGYYGEGSS 126

Query: 139 XXXXXXXXXXXPGMTRVRLTRARQYAAQLPSMCRVEPQQCSIFAAGQY 186
                      PGMTRVRLTRARQYAAQLPSMCRVEPQQCSIFAAGQY
Sbjct: 127 EEGYYGEQQQQPGMTRVRLTRARQYAAQLPSMCRVEPQQCSIFAAGQY 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,905,763
Number of extensions: 112774
Number of successful extensions: 236
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 4
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 153 (63.5 bits)