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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0499100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 26 kDa globulin (Alpha-globulin).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0121) R2 : 0.000101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00548 (0.0255) R2dN8 : 0.000131 R2N8 : 0.000101
σ : 0.228
deviance : 23.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.08 0.221 3.07 0.00935 0.119 0.0915 -0.226 0.54 0.00456 6.77 40.64 10 -- --
22.77 0.222 3.07 0.0197 0.118 0.0927 -0.182 -- 0.00764 6.56 39.43 9 -- --
22.2 0.219 3.07 0.00827 0.116 0.0882 -- 0.509 0.00449 7.11 40.74 9 -- --
22.82 0.223 3.07 0.025 0.119 0.0873 -- -- 0.0104 7.01 38.95 9 -- --
22.93 0.223 3.08 0.0107 -- 0.0975 -- 0.518 0.00804 -- 40.64 9 -- --
23.03 0.225 3.07 0.0237 0.128 -- -0.0526 -- 0.00618 7.65 -- -- -- --
23.04 0.225 3.07 0.0227 0.128 -- -- -- 0.00642 7.86 -- -- -- --
23.58 0.226 3.07 0.0301 -- 0.0969 -- -- 0.0129 -- 39.72 9 -- --
22.84 0.223 3.07 -- 0.12 0.0865 -- -- 0.00827 6.97 38.89 9 -- --
23.92 0.229 3.07 0.0242 -- -- -- -- 0.00816 -- -- -- -- --
23.05 0.225 3.07 -- 0.128 -- -- -- 0.00389 7.84 -- -- -- --
23.6 0.226 3.07 -- -- 0.092 -- -- 0.00285 -- 38.98 9 -- --
23.94 0.228 3.08 -- -- -- -- -- 0.00548 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.17 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 21.28 atmosphere 1005.0 10 > th dose dependent rect. 2 2
7 21.41 temperature 20.0 30 > th dose dependent rect. 2 1
8 21.42 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 21.42 atmosphere 1000.0 30 > th dose independent rect. 3 23
10 21.43 temperature 20.0 30 > th dose independent rect. 2 1
14 21.44 humidity 90.0 90 < th dose independent rect. 2 4
19 21.47 wind 3.0 30 < th dose independent rect. 2 1
21 21.47 wind 3.0 30 < th dose dependent rect. 2 1
25 21.47 humidity 80.0 14400 < th dose dependent rect. 4 5
29 21.48 humidity 80.0 30 > th dose independent rect. 2 1
33 21.49 temperature 10.0 30 > th dose independent rect. 2 1
35 21.49 temperature 30.0 30 < th dose independent rect. 2 1
36 21.49 humidity 50.0 30 > th dose independent rect. 2 1
41 21.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
43 21.49 radiation 1.0 30 < th dose independent rect. 2 1
48 21.49 precipitation 0.1 30 < th dose independent rect. 2 1
49 21.49 temperature 10.0 30 > th dose independent rect. 3 23
50 21.49 humidity 50.0 30 > th dose dependent rect. 2 1
54 21.49 radiation 1.0 30 < th dose dependent rect. 2 1
59 21.49 precipitation 0.1 30 < th dose dependent rect. 2 1
62 21.50 humidity 80.0 14400 < th dose dependent rect. 7 2
64 21.51 wind 1.0 14400 < th dose dependent rect. 4 3
67 21.54 humidity 70.0 14400 > th dose independent rect. 8 1
68 21.56 wind 1.0 14400 < th dose independent rect. 4 3
69 21.56 humidity 70.0 14400 < th dose independent rect. 7 3
83 21.57 humidity 50.0 14400 > th dose independent rect. 15 1
85 21.57 humidity 80.0 14400 < th dose dependent rect. 24 10
87 21.58 wind 1.0 14400 > th dose independent rect. 4 3
92 21.59 wind 1.0 30 > th dose independent rect. 2 1
93 21.59 radiation 1.0 4320 < th dose dependent rect. 3 1
96 21.60 humidity 70.0 14400 > th dose independent rect. 7 3
109 21.60 temperature 30.0 30 < th dose dependent rect. 2 1
110 21.60 atmosphere 1015.0 30 < th dose dependent rect. 2 1
128 21.63 wind 9.0 1440 < th dose independent rect. 3 1
129 21.63 temperature 10.0 1440 > th dose independent rect. 3 1
132 21.63 temperature 30.0 1440 < th dose independent rect. 3 1
136 21.63 humidity 50.0 1440 > th dose independent rect. 3 1
146 21.63 atmosphere 995.0 1440 > th dose independent rect. 3 1
147 21.63 radiation 1.0 1440 < th dose independent rect. 3 1
168 21.63 temperature 10.0 1440 > th dose independent rect. 4 23
180 21.64 temperature 25.0 90 > th dose dependent rect. 1 3
181 21.64 wind 1.0 14400 < th dose dependent rect. 2 5
209 21.69 temperature 25.0 90 > th dose independent rect. 1 3
235 21.73 wind 1.0 14400 < th dose dependent rect. 6 1
254 21.74 humidity 60.0 14400 < th dose dependent rect. 12 1
256 21.74 atmosphere 1000.0 30 > th dose dependent rect. 2 6
263 21.75 wind 5.0 30 < th dose dependent rect. 2 6
265 21.76 humidity 60.0 14400 < th dose independent rect. 10 2
281 21.78 atmosphere 1000.0 30 > th dose independent rect. 8 18
285 21.78 humidity 60.0 14400 < th dose dependent rect. 12 4
292 21.79 temperature 30.0 270 < th dose independent rect. 9 23
305 21.80 humidity 50.0 14400 > th dose independent rect. 14 3
306 21.80 temperature 30.0 4320 < th dose independent rect. 3 6
343 21.81 humidity 60.0 14400 < th dose dependent rect. 14 2
348 21.82 wind 1.0 14400 < th dose independent rect. 2 5
373 21.83 humidity 50.0 14400 > th dose independent rect. 14 6
381 21.83 humidity 50.0 14400 > th dose independent rect. 14 15
389 21.83 humidity 90.0 90 < th dose dependent rect. 2 5
392 21.84 humidity 60.0 14400 > th dose independent rect. 10 2
396 21.84 wind 5.0 30 < th dose independent rect. 2 6
430 21.85 wind 1.0 14400 > th dose independent rect. 2 5
433 21.85 humidity 50.0 30 > th dose independent rect. 8 18
435 21.85 humidity 80.0 14400 < th dose dependent sin 7 NA
436 21.85 wind 1.0 14400 < th dose dependent rect. 2 1
461 21.86 atmosphere 995.0 720 > th dose independent rect. 23 16
491 21.86 humidity 60.0 14400 < th dose dependent rect. 12 23
494 21.87 wind 1.0 14400 > th dose independent rect. 1 2
499 21.87 humidity 60.0 14400 < th dose dependent sin 21 NA
505 21.87 humidity 70.0 14400 < th dose dependent rect. 10 1
567 21.88 humidity 60.0 14400 < th dose dependent no NA NA
701 21.88 humidity 60.0 14400 < th dose dependent rect. 14 23
710 21.89 precipitation 0.1 30 < th dose independent rect. 3 23
715 21.89 humidity 90.0 14400 < th dose dependent rect. 12 1
742 21.89 precipitation 0.1 30 < th dose dependent rect. 3 23
743 21.90 humidity 60.0 14400 < th dose independent sin 7 NA
749 21.90 atmosphere 995.0 720 > th dose independent rect. 15 23
760 21.91 atmosphere 1005.0 30 > th dose independent rect. 2 3
792 21.91 atmosphere 995.0 720 > th dose independent rect. 3 23
825 21.92 humidity 50.0 14400 > th dose dependent rect. 8 1
854 21.93 humidity 50.0 14400 > th dose independent sin 14 NA
866 21.93 wind 1.0 14400 > th dose independent rect. 4 7
874 21.93 humidity 60.0 10 > th dose independent rect. 14 12
876 21.93 atmosphere 1000.0 30 > th dose independent rect. 14 12
909 21.94 atmosphere 1010.0 30 < th dose independent rect. 2 6
923 21.94 atmosphere 995.0 1440 > th dose independent rect. 3 12
939 21.94 humidity 90.0 90 < th dose dependent rect. 2 1
941 21.94 humidity 90.0 10 < th dose dependent rect. 3 2
970 21.95 wind 9.0 1440 < th dose independent rect. 3 6
971 21.95 temperature 10.0 30 > th dose independent rect. 2 6
973 21.95 temperature 10.0 1440 > th dose independent rect. 3 6
976 21.95 temperature 30.0 30 < th dose independent rect. 2 6
977 21.95 humidity 50.0 30 > th dose independent rect. 2 6
979 21.95 humidity 50.0 1440 > th dose independent rect. 3 6
981 21.95 atmosphere 995.0 30 > th dose independent rect. 2 6
983 21.95 atmosphere 995.0 1440 > th dose independent rect. 3 6
985 21.95 precipitation 0.1 30 < th dose independent rect. 2 6
987 21.95 temperature 10.0 30 > th dose independent rect. 8 18
988 21.95 temperature 10.0 1440 > th dose independent rect. 9 18