BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0495100 Os05g0495100|AK108028
         (368 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0495100  Conserved hypothetical protein                      584   e-167

>Os05g0495100 Conserved hypothetical protein
          Length = 368

 Score =  584 bits (1505), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/368 (79%), Positives = 294/368 (79%)

Query: 1   MDQRKALFXXXXXXXXXXXXXXXXIDPSLVRYNEFDQPICRICNVTLKSEALWPAHQVSR 60
           MDQRKALF                IDPSLVRYNEFDQPICRICNVTLKSEALWPAHQVSR
Sbjct: 1   MDQRKALFRAKLREREAKEKQERRIDPSLVRYNEFDQPICRICNVTLKSEALWPAHQVSR 60

Query: 61  KHHEXXXXXXXXXXXXXXXXXRGNKANHEQPAESQKPKSSTLPANFFENQGMKRHSDGAG 120
           KHHE                 RGNKANHEQPAESQKPKSSTLPANFFENQGMKRHSDGAG
Sbjct: 61  KHHEAKAAAAASAKAPSGAGSRGNKANHEQPAESQKPKSSTLPANFFENQGMKRHSDGAG 120

Query: 121 SEGRSVRREVADVQQKTKEASKTKPSVNFEKIPKKESQANTNVKGVLPGNFFDYNDEDED 180
           SEGRSVRREVADVQQKTKEASKTKPSVNFEKIPKKESQANTNVKGVLPGNFFDYNDEDED
Sbjct: 121 SEGRSVRREVADVQQKTKEASKTKPSVNFEKIPKKESQANTNVKGVLPGNFFDYNDEDED 180

Query: 181 PAPTEANSAPGNPPISNRMQVKGVPDGFFDGNKNSNGMQPSEPSQSSKAVKSSETSEVKG 240
           PAPTEANSAPGNPPISNRMQVKGVPDGFFDGNKNSNGMQPSEPSQSSKAVKSSETSEVKG
Sbjct: 181 PAPTEANSAPGNPPISNRMQVKGVPDGFFDGNKNSNGMQPSEPSQSSKAVKSSETSEVKG 240

Query: 241 SLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEVXXXXXXXXXXXXXXXX 300
           SLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEV                
Sbjct: 241 SLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEVDDRLEEEEIDAAAERE 300

Query: 301 XXXXXXXXXXXXRVDMLKKQLTESKAARTTKANSKPVGMDMLXXXXXXXXXXXXXTDFAV 360
                       RVDMLKKQLTESKAARTTKANSKPVGMDML             TDFAV
Sbjct: 301 EYLTLEQEEYRQRVDMLKKQLTESKAARTTKANSKPVGMDMLSSSDSSSDEEDDSTDFAV 360

Query: 361 DWRAQHLK 368
           DWRAQHLK
Sbjct: 361 DWRAQHLK 368



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.127    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,453,730
Number of extensions: 417426
Number of successful extensions: 1279
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 266
Effective length of database: 11,709,973
Effective search space: 3114852818
Effective search space used: 3114852818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)