BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0482700 Os05g0482700|AK065541
(559 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0482700 Similar to 2,3-bisphosphoglycerate-independent... 1150 0.0
Os01g0817700 Similar to 2,3-bisphosphoglycerate-independent... 1059 0.0
Os03g0330200 Similar to 2,3-bisphosphoglycerate-independent... 902 0.0
AK110143 478 e-135
>Os05g0482700 Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate
mutase (EC 5.4.2.1) (Phosphoglyceromutase)
(BPG-independent PGAM) (PGAM-I)
Length = 559
Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/559 (100%), Positives = 559/559 (100%)
Query: 1 MGSSDFSWTLPDHPKLPKGKPVAVVVLDGWGEADADQYNCIHVAETPTMDSLKKGAPEKW 60
MGSSDFSWTLPDHPKLPKGKPVAVVVLDGWGEADADQYNCIHVAETPTMDSLKKGAPEKW
Sbjct: 1 MGSSDFSWTLPDHPKLPKGKPVAVVVLDGWGEADADQYNCIHVAETPTMDSLKKGAPEKW 60
Query: 61 KLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDTALASGKIFEGEGFKYIK 120
KLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDTALASGKIFEGEGFKYIK
Sbjct: 61 KLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDTALASGKIFEGEGFKYIK 120
Query: 121 ESFDQGTLHLIGLLSDGGVHSRLDQLQLLLNGASANGAKKIRVHILTDGRDVLDGTSVGF 180
ESFDQGTLHLIGLLSDGGVHSRLDQLQLLLNGASANGAKKIRVHILTDGRDVLDGTSVGF
Sbjct: 121 ESFDQGTLHLIGLLSDGGVHSRLDQLQLLLNGASANGAKKIRVHILTDGRDVLDGTSVGF 180
Query: 181 VETLENDLSQLRAKGIDACIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFQNA 240
VETLENDLSQLRAKGIDACIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFQNA
Sbjct: 181 VETLENDLSQLRAKGIDACIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFQNA 240
Query: 241 VEAVKTLRSETKANDQYLPPFVIVDDSDKAVGPIVDGDAVVTFNFRADRMVMIAKALEYE 300
VEAVKTLRSETKANDQYLPPFVIVDDSDKAVGPIVDGDAVVTFNFRADRMVMIAKALEYE
Sbjct: 241 VEAVKTLRSETKANDQYLPPFVIVDDSDKAVGPIVDGDAVVTFNFRADRMVMIAKALEYE 300
Query: 301 DFDKFDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGIRTFACSETV 360
DFDKFDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGIRTFACSETV
Sbjct: 301 DFDKFDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGIRTFACSETV 360
Query: 361 KFGHVTFFWNGNRSGYFDETKEEYVEIPSDSGITFNVKPKMKALEIAEKARDAILSGKFD 420
KFGHVTFFWNGNRSGYFDETKEEYVEIPSDSGITFNVKPKMKALEIAEKARDAILSGKFD
Sbjct: 361 KFGHVTFFWNGNRSGYFDETKEEYVEIPSDSGITFNVKPKMKALEIAEKARDAILSGKFD 420
Query: 421 QVRVNLPNGDMVGHTGDIEATVVACKAADEAVKMILDAIEQVGGIYLVTADHGNAEDMVK 480
QVRVNLPNGDMVGHTGDIEATVVACKAADEAVKMILDAIEQVGGIYLVTADHGNAEDMVK
Sbjct: 421 QVRVNLPNGDMVGHTGDIEATVVACKAADEAVKMILDAIEQVGGIYLVTADHGNAEDMVK 480
Query: 481 RNKSGQPQLDKKGEIQILTSHTLQPVPVAIGGPGLHSGVRFRNDVQTPGLANVAATVMNL 540
RNKSGQPQLDKKGEIQILTSHTLQPVPVAIGGPGLHSGVRFRNDVQTPGLANVAATVMNL
Sbjct: 481 RNKSGQPQLDKKGEIQILTSHTLQPVPVAIGGPGLHSGVRFRNDVQTPGLANVAATVMNL 540
Query: 541 HGFEAPADYEPTLIEVVDK 559
HGFEAPADYEPTLIEVVDK
Sbjct: 541 HGFEAPADYEPTLIEVVDK 559
>Os01g0817700 Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate
mutase (EC 5.4.2.1) (Phosphoglyceromutase)
(BPG-independent PGAM) (PGAM-I)
Length = 559
Score = 1059 bits (2739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/558 (91%), Positives = 536/558 (96%)
Query: 1 MGSSDFSWTLPDHPKLPKGKPVAVVVLDGWGEADADQYNCIHVAETPTMDSLKKGAPEKW 60
M SS FSWTLPDHPKLPKGK VA+VVLDGWGEA+AD+YNCIHVA+TP MDSLK GAPE+W
Sbjct: 1 MASSGFSWTLPDHPKLPKGKTVALVVLDGWGEANADKYNCIHVAQTPVMDSLKNGAPERW 60
Query: 61 KLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDTALASGKIFEGEGFKYIK 120
+LVKAHGTAVGLPS+DDMGNSEVGHNALGAGRIFAQGAKLVD ALASGKI++GEGF YIK
Sbjct: 61 RLVKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYDGEGFNYIK 120
Query: 121 ESFDQGTLHLIGLLSDGGVHSRLDQLQLLLNGASANGAKKIRVHILTDGRDVLDGTSVGF 180
E FD+GTLHLIGLLSDGGVHSRLDQ+QLLL GAS GAK+IRVHILTDGRDVLDG+SVGF
Sbjct: 121 ECFDKGTLHLIGLLSDGGVHSRLDQVQLLLKGASERGAKRIRVHILTDGRDVLDGSSVGF 180
Query: 181 VETLENDLSQLRAKGIDACIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFQNA 240
VETLE+DLSQLR KGIDA IASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAP+KFQNA
Sbjct: 181 VETLESDLSQLRDKGIDARIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPYKFQNA 240
Query: 241 VEAVKTLRSETKANDQYLPPFVIVDDSDKAVGPIVDGDAVVTFNFRADRMVMIAKALEYE 300
VEAVKTLR+ETKA+DQYLPPFVIVD+S K+VGP+VDGDAVVTFNFRADRMVM+AKALEY
Sbjct: 241 VEAVKTLRAETKASDQYLPPFVIVDESGKSVGPVVDGDAVVTFNFRADRMVMLAKALEYA 300
Query: 301 DFDKFDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGIRTFACSETV 360
DFDKFDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNG+RTFACSETV
Sbjct: 301 DFDKFDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGVRTFACSETV 360
Query: 361 KFGHVTFFWNGNRSGYFDETKEEYVEIPSDSGITFNVKPKMKALEIAEKARDAILSGKFD 420
KFGHVTFFWNGNRSGYFDETKEEYVEIPSD GITFNVKP MKALEIAEKARDAILSGKFD
Sbjct: 361 KFGHVTFFWNGNRSGYFDETKEEYVEIPSDIGITFNVKPNMKALEIAEKARDAILSGKFD 420
Query: 421 QVRVNLPNGDMVGHTGDIEATVVACKAADEAVKMILDAIEQVGGIYLVTADHGNAEDMVK 480
QVRVNLPNGDMVGHTGDIEATVVACKAADEAVK+ILDAIEQVGGIYLVTADHGNAEDMVK
Sbjct: 421 QVRVNLPNGDMVGHTGDIEATVVACKAADEAVKIILDAIEQVGGIYLVTADHGNAEDMVK 480
Query: 481 RNKSGQPQLDKKGEIQILTSHTLQPVPVAIGGPGLHSGVRFRNDVQTPGLANVAATVMNL 540
RNKSGQP LDK G IQILTSHTLQPVPVAIGGPGLH GV+FR+D+QTPGLANVAATVMN
Sbjct: 481 RNKSGQPLLDKNGGIQILTSHTLQPVPVAIGGPGLHPGVKFRSDIQTPGLANVAATVMNF 540
Query: 541 HGFEAPADYEPTLIEVVD 558
HGFEAPADYEPTLIEVVD
Sbjct: 541 HGFEAPADYEPTLIEVVD 558
>Os03g0330200 Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate
mutase (EC 5.4.2.1) (Phosphoglyceromutase)
(BPG-independent PGAM) (PGAM-I)
Length = 551
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/552 (79%), Positives = 492/552 (89%), Gaps = 7/552 (1%)
Query: 8 WTLPDHPKLPKGKPVAVVVLDGWGEADADQYNCIHVAETPTMDSLKKGAPEKWKLVKAHG 67
W L H +L KGK V VVVLDGWGEA D +NCIHVA+TPT+D+LKKG PE+W+++KAHG
Sbjct: 7 WELAAHRRLEKGKVVGVVVLDGWGEAAPDTFNCIHVADTPTLDALKKGGPERWRVIKAHG 66
Query: 68 TAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDTALASGKIFEGEGFKYIKESFDQGT 127
TAVGLP+DDDMGNSEVGHNALGAG+I+AQGAKLVD ALASGKI+EGEGFKYI++SF+ GT
Sbjct: 67 TAVGLPTDDDMGNSEVGHNALGAGQIYAQGAKLVDMALASGKIYEGEGFKYIQQSFENGT 126
Query: 128 LHLIGLLSDGGVHSRLDQLQLLLNGASANGAKKIRVHILTDGRDVLDGTSVGFVETLEND 187
LHLIGLLSDGGVHSR+DQLQLLL GAS +GAK+IRVHILTDGRDVLDG+SV FVE +END
Sbjct: 127 LHLIGLLSDGGVHSRIDQLQLLLKGASEHGAKRIRVHILTDGRDVLDGSSVKFVELIEND 186
Query: 188 LSQLRAKGIDACIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFQNAVEAVKTL 247
L++LR KG+DA IASGGGRMY NDW VVKRGWDAQVLGEAPHKFQNA+EAVK L
Sbjct: 187 LAKLRDKGVDARIASGGGRMY-------NDWQVVKRGWDAQVLGEAPHKFQNALEAVKKL 239
Query: 248 RSETKANDQYLPPFVIVDDSDKAVGPIVDGDAVVTFNFRADRMVMIAKALEYEDFDKFDR 307
R + KANDQYLPPFVIVD+ + +GPI+DGDAVVTFNFRADRMVM+AKALEYE FDKFDR
Sbjct: 240 REDPKANDQYLPPFVIVDERGRPIGPIMDGDAVVTFNFRADRMVMLAKALEYESFDKFDR 299
Query: 308 VRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGIRTFACSETVKFGHVTF 367
VR PKIRYAGMLQYDGELKLPSH+LV+PPEIERTSGEYL +NGIRT+ACSETVKFGHVTF
Sbjct: 300 VRFPKIRYAGMLQYDGELKLPSHFLVAPPEIERTSGEYLARNGIRTYACSETVKFGHVTF 359
Query: 368 FWNGNRSGYFDETKEEYVEIPSDSGITFNVKPKMKALEIAEKARDAILSGKFDQVRVNLP 427
FWNGNRSGYF E+Y EIPSD GI FN +PKMKA+EIA+K RDAILS KFDQVRVN+
Sbjct: 360 FWNGNRSGYFHPNLEKYEEIPSDIGIPFNEQPKMKAVEIAKKTRDAILSRKFDQVRVNIA 419
Query: 428 NGDMVGHTGDIEATVVACKAADEAVKMILDAIEQVGGIYLVTADHGNAEDMVKRNKSGQP 487
NGDMVGHTGDIEAT+V CKAADEAVK++LDAIEQVGGI++VTADHGNAEDMVKR+KSG+P
Sbjct: 420 NGDMVGHTGDIEATIVGCKAADEAVKIVLDAIEQVGGIFVVTADHGNAEDMVKRDKSGKP 479
Query: 488 QLDKKGEIQILTSHTLQPVPVAIGGPGLHSGVRFRNDVQTPGLANVAATVMNLHGFEAPA 547
DK G +Q LTSHTL PVP+AIGGPGL GVRFR+D+ + GLANVAATVMNLHGFEAP
Sbjct: 480 LRDKDGNVQPLTSHTLNPVPIAIGGPGLQPGVRFRSDLPSAGLANVAATVMNLHGFEAPD 539
Query: 548 DYEPTLIEVVDK 559
YEPTLIEVVDK
Sbjct: 540 HYEPTLIEVVDK 551
>AK110143
Length = 246
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/245 (93%), Positives = 235/245 (95%)
Query: 314 RYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGIRTFACSETVKFGHVTFFWNGNR 373
RYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNG+RTFACSETVKFGHVTFFWNGNR
Sbjct: 1 RYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVKNGVRTFACSETVKFGHVTFFWNGNR 60
Query: 374 SGYFDETKEEYVEIPSDSGITFNVKPKMKALEIAEKARDAILSGKFDQVRVNLPNGDMVG 433
SGYFDETK EYVEIPSD GITFNVK MKALEIAEKARDAILSGKFDQVRVNLPNGDMVG
Sbjct: 61 SGYFDETKGEYVEIPSDIGITFNVKSNMKALEIAEKARDAILSGKFDQVRVNLPNGDMVG 120
Query: 434 HTGDIEATVVACKAADEAVKMILDAIEQVGGIYLVTADHGNAEDMVKRNKSGQPQLDKKG 493
HTGDIEATVVACKAADEAVK+ILDAIEQVGGIYLVTADHGNAEDMVKRNKSGQP LDK G
Sbjct: 121 HTGDIEATVVACKAADEAVKIILDAIEQVGGIYLVTADHGNAEDMVKRNKSGQPLLDKNG 180
Query: 494 EIQILTSHTLQPVPVAIGGPGLHSGVRFRNDVQTPGLANVAATVMNLHGFEAPADYEPTL 553
IQILTSHTLQPVPVAIGGPGLH GV+FR+D+QTPGLANVAAT MN HGFEAPADYEPTL
Sbjct: 181 GIQILTSHTLQPVPVAIGGPGLHPGVKFRSDIQTPGLANVAATAMNFHGFEAPADYEPTL 240
Query: 554 IEVVD 558
IEVVD
Sbjct: 241 IEVVD 245
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,563,484
Number of extensions: 933397
Number of successful extensions: 1775
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1774
Number of HSP's successfully gapped: 4
Length of query: 559
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 453
Effective length of database: 11,501,117
Effective search space: 5210006001
Effective search space used: 5210006001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)