Os05g0482700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I).
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Os05g0482700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.79 | 0.296 | 13.2 | -0.729 | 0.391 | -0.517 | 0.404 | -1.1 | -0.237 | 18.3 | 21.6 | 1905 | -- | -- |
| 42.45 | 0.303 | 13.1 | -0.423 | 0.39 | -0.454 | 0.283 | -- | -0.16 | 18.3 | 21.75 | 1884 | -- | -- |
| 40.13 | 0.295 | 13.2 | -0.74 | 0.392 | -0.494 | -- | -1.06 | -0.239 | 18.5 | 21.7 | 1958 | -- | -- |
| 42.64 | 0.304 | 13.1 | -0.425 | 0.389 | -0.453 | -- | -- | -0.162 | 18.6 | 21.76 | 1890 | -- | -- |
| 47.26 | 0.32 | 13.2 | -0.787 | -- | -0.49 | -- | -1.15 | -0.252 | -- | 21.74 | 1391 | -- | -- |
| 49 | 0.328 | 13.2 | -0.625 | 0.373 | -- | 0.281 | -- | -0.304 | 18.3 | -- | -- | -- | -- |
| 49.18 | 0.328 | 13.2 | -0.629 | 0.374 | -- | -- | -- | -0.303 | 18.4 | -- | -- | -- | -- |
| 50.15 | 0.33 | 13.1 | -0.452 | -- | -0.448 | -- | -- | -0.173 | -- | 21.75 | 1485 | -- | -- |
| 46.7 | 0.318 | 13.1 | -- | 0.418 | -0.588 | -- | -- | -0.0742 | 18.6 | 21.61 | 1950 | -- | -- |
| 56.47 | 0.351 | 13.1 | -0.639 | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
| 59.61 | 0.361 | 13.1 | -- | 0.383 | -- | -- | -- | -0.233 | 18.3 | -- | -- | -- | -- |
| 54.77 | 0.345 | 13.1 | -- | -- | -0.583 | -- | -- | -0.0894 | -- | 21.7 | 1694 | -- | -- |
| 67.23 | 0.383 | 13.1 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.90 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 8 | 39.53 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 11 | 39.61 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 13 | 39.68 | temperature | 25.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 14 | 39.68 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 44 | 39.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 63 | 39.99 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 78 | 40.07 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 82 | 40.10 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 84 | 40.13 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 89 | 40.15 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 95 | 40.19 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 130 | 40.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 22 |
| 155 | 40.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 167 | 40.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 172 | 40.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 186 | 40.51 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 188 | 40.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 20 |
| 193 | 40.53 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 201 | 40.54 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 221 | 40.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 222 | 40.60 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 224 | 40.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 228 | 40.61 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 233 | 40.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 241 | 40.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 243 | 40.67 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 280 | 40.80 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 281 | 40.80 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 298 | 40.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 304 | 40.87 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 306 | 40.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 308 | 40.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 331 | 40.94 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 349 | 40.97 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 387 | 41.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 392 | 41.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 397 | 41.04 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 405 | 41.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 406 | 41.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 419 | 41.06 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 428 | 41.07 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 433 | 41.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 436 | 41.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 443 | 41.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 471 | 41.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 472 | 41.12 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 474 | 41.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 487 | 41.14 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 494 | 41.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 501 | 41.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 527 | 41.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 535 | 41.21 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 538 | 41.21 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 588 | 41.27 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 607 | 41.30 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 621 | 41.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 635 | 41.33 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 662 | 41.35 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 663 | 41.35 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 675 | 41.36 | wind | 1.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 818 | 41.47 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 827 | 41.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 833 | 41.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 835 | 41.49 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 853 | 41.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 864 | 41.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 870 | 41.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 895 | 41.53 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 899 | 41.53 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 923 | 41.56 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 924 | 41.56 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 970 | 41.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 976 | 41.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |