BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0477800 Os05g0477800|AK109779
         (257 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0477800  Conserved hypothetical protein                      306   1e-83
Os06g0221500                                                      122   3e-28

>Os05g0477800 Conserved hypothetical protein
          Length = 257

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/257 (65%), Positives = 168/257 (65%)

Query: 1   WMRLSIDCCEHRFVLRAAAGVRGDGELEEPXXXXXXXXXXXXXXXXXXQGEGVRRPAAVH 60
           WMRLSIDCCEHRFVLRAAAGVRGDGELEEP                  QGEGVRRPAAVH
Sbjct: 1   WMRLSIDCCEHRFVLRAAAGVRGDGELEEPRGGAGGHVVAAGGVHRRRQGEGVRRPAAVH 60

Query: 61  XXXXXXXXXXXXXXXYSWIPQAEDPDGFHVAVSNHRVHGWHGGRDRAAAAQGLPRHDALH 120
                          YSWIPQAEDPDGFHVAVSNHRVHGWHGGRDRAAAAQGLPRHDALH
Sbjct: 61  AARLRVGLVHRRHVGYSWIPQAEDPDGFHVAVSNHRVHGWHGGRDRAAAAQGLPRHDALH 120

Query: 121 HQEVSTFVSXXXXXXXXXXXXXXXXXXXTSGTPLPSARSVTAXXXXXXXXXXXXXXXXXX 180
           HQEVSTFVS                   TSGTPLPSARSVTA                  
Sbjct: 121 HQEVSTFVSAFVVGAVALIAAAFAIPPATSGTPLPSARSVTAAIDGERRRRPARREIAGG 180

Query: 181 XVGPAAAARTRKWRRSASTGREARRSVXXXXXXXXXXXXXXXXXXVATLTCGAHVGLTLT 240
            VGPAAAARTRKWRRSASTGREARRSV                  VATLTCGAHVGLTLT
Sbjct: 181 EVGPAAAARTRKWRRSASTGREARRSVERGEKRARERGGEREDDDVATLTCGAHVGLTLT 240

Query: 241 QLTRRIKPGSKPPKNLN 257
           QLTRRIKPGSKPPKNLN
Sbjct: 241 QLTRRIKPGSKPPKNLN 257



>Os06g0221500 
          Length = 330

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 1   WMRLSIDCCEHRFVLRAAAGVRGDGELEEPXXXXXXXXXXXXXXXXXXQGEGVRRPAAVH 60
           W  L  D   HRFVL AA GVRGDGELEEP                  QGEG RRP AVH
Sbjct: 50  WYDLLADV--HRFVLPAAVGVRGDGELEEPRGGAGGHVVAAGGVHHRRQGEGFRRPTAVH 107

Query: 61  XXXXXXXXXXXXXXXYSWIPQAEDPDGFHVAVSNHRVHGWHGGRDRAAAAQGLPRHDALH 120
                          +SWIPQA DPDGFHV   +HRVHG HGGRD AAAAQG PRHDAL 
Sbjct: 108 VARLHVGLLHRCPAGHSWIPQAGDPDGFHVTAGDHRVHGRHGGRDHAAAAQGHPRHDALT 167

Query: 121 HQEVSTFV 128
            ++VS FV
Sbjct: 168 TKKVSAFV 175



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,721,606
Number of extensions: 198192
Number of successful extensions: 460
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)