BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0477500 Os05g0477500|AK110953
         (214 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0477500  Conserved hypothetical protein                      399   e-111

>Os05g0477500 Conserved hypothetical protein
          Length = 214

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/214 (90%), Positives = 194/214 (90%)

Query: 1   MGGFQFLEXXXXXXXXXXXXXXXXXXXXARLMARDTTKSREPRVNPQVRLAQAKRFAEGA 60
           MGGFQFLE                    ARLMARDTTKSREPRVNPQVRLAQAKRFAEGA
Sbjct: 1   MGGFQFLEAPSDRSDSSVSSLVPTSPAPARLMARDTTKSREPRVNPQVRLAQAKRFAEGA 60

Query: 61  LEHYNRRKKDKFELVDAVPCIGIPEPHCIYTHINFTARSSKKGSQELLFFAELYHCQRRQ 120
           LEHYNRRKKDKFELVDAVPCIGIPEPHCIYTHINFTARSSKKGSQELLFFAELYHCQRRQ
Sbjct: 61  LEHYNRRKKDKFELVDAVPCIGIPEPHCIYTHINFTARSSKKGSQELLFFAELYHCQRRQ 120

Query: 121 EVFTARLSKKGSRGEPSNAGRSLVQRGFVVTCCEPLGPDSMVGRKLLERDDTKVVRKNTD 180
           EVFTARLSKKGSRGEPSNAGRSLVQRGFVVTCCEPLGPDSMVGRKLLERDDTKVVRKNTD
Sbjct: 121 EVFTARLSKKGSRGEPSNAGRSLVQRGFVVTCCEPLGPDSMVGRKLLERDDTKVVRKNTD 180

Query: 181 FTYCYGCPQMISHPKGEMYIAGHCNIPHVYEGVR 214
           FTYCYGCPQMISHPKGEMYIAGHCNIPHVYEGVR
Sbjct: 181 FTYCYGCPQMISHPKGEMYIAGHCNIPHVYEGVR 214



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,600,424
Number of extensions: 257226
Number of successful extensions: 456
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)