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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0477500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0501) R2 : 0.00152
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0878 (0.105) R2dN8 : 0.00196 R2N8 : 0.00152
σ : 0.943
deviance : 407.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
394.51 0.933 3.14 -0.315 0.116 -0.05 -0.993 2.65 -0.1 22.6 49.98 1200 -- --
396.8 0.928 3.17 -0.447 0.101 0.755 -0.915 -- -0.0818 22.5 48.8 1151 -- --
398.33 0.93 3.14 -0.278 0.145 -0.0222 -- 2.4 -0.0889 21 50.99 1212 -- --
399.82 0.931 3.17 -0.386 0.144 0.688 -- -- -0.0695 20.7 48.2 1200 -- --
399.47 0.931 3.14 -0.274 -- 0.0309 -- 2.41 -0.0894 -- 51 1200 -- --
402.17 0.94 3.18 -0.3 0.147 -- -0.779 -- -0.12 22.2 -- -- -- --
404.49 0.942 3.18 -0.267 0.16 -- -- -- -0.117 21.1 -- -- -- --
400.86 0.932 3.17 -0.406 -- 0.713 -- -- -0.0827 -- 48.43 1196 -- --
403.64 0.936 3.16 -- 0.151 0.502 -- -- -0.0514 20.3 48.74 1200 -- --
405.97 0.941 3.18 -0.267 -- -- -- -- -0.117 -- -- -- -- --
406.37 0.943 3.17 -- 0.16 -- -- -- -0.0868 21 -- -- -- --
404.81 0.937 3.16 -- -- 0.531 -- -- -0.0526 -- 49 1151 -- --
407.85 0.943 3.17 -- -- -- -- -- -0.0878 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 378.76 wind 1.0 10 < th dose dependent rect. 1 1
2 379.64 radiation 20.0 90 < th dose independent rect. 14 14
3 379.67 temperature 20.0 30 > th dose independent rect. 2 1
4 379.72 temperature 20.0 30 > th dose dependent rect. 2 1
9 380.96 temperature 25.0 90 < th dose dependent rect. 14 3
12 382.06 wind 1.0 30 > th dose independent rect. 2 1
14 382.37 radiation 20.0 90 < th dose independent rect. 15 1
16 382.63 humidity 80.0 30 > th dose independent rect. 2 1
19 382.78 atmosphere 995.0 90 > th dose independent rect. 14 14
20 382.82 precipitation 0.1 90 < th dose independent rect. 14 14
21 382.82 precipitation 0.1 90 < th dose dependent rect. 14 14
22 382.85 wind 1.0 10 < th dose independent rect. 1 1
24 383.18 wind 5.0 30 < th dose independent rect. 2 1
27 383.19 humidity 50.0 90 > th dose independent rect. 4 10
28 383.26 atmosphere 1015.0 30 < th dose dependent rect. 2 1
30 383.33 temperature 10.0 30 > th dose independent rect. 2 1
32 383.33 temperature 30.0 30 < th dose independent rect. 2 1
33 383.33 humidity 50.0 30 > th dose independent rect. 2 1
36 383.33 atmosphere 995.0 30 > th dose independent rect. 2 1
37 383.33 atmosphere 1010.0 30 < th dose independent rect. 2 1
39 383.33 radiation 1.0 30 < th dose independent rect. 2 1
44 383.33 precipitation 0.1 30 < th dose independent rect. 2 1
45 383.33 temperature 10.0 30 > th dose independent rect. 3 23
46 383.33 radiation 1.0 30 < th dose dependent rect. 2 1
51 383.33 precipitation 0.1 30 < th dose dependent rect. 2 1
53 383.40 radiation 40.0 90 < th dose independent rect. 14 14
54 383.40 humidity 50.0 30 > th dose dependent rect. 2 1
58 383.51 atmosphere 995.0 30 > th dose dependent rect. 2 1
61 383.56 wind 9.0 30 < th dose dependent rect. 2 1
65 383.75 wind 9.0 90 < th dose independent rect. 4 10
66 383.75 temperature 10.0 90 > th dose independent rect. 4 10
67 383.75 atmosphere 995.0 90 > th dose independent rect. 4 10
68 383.75 atmosphere 1015.0 90 < th dose independent rect. 4 10
69 383.75 temperature 10.0 90 > th dose independent rect. 14 14
74 383.95 precipitation 0.1 90 < th dose independent rect. 4 10
75 383.95 precipitation 0.1 90 < th dose dependent rect. 4 10
77 384.10 atmosphere 995.0 90 > th dose dependent rect. 14 14
79 384.20 humidity 90.0 90 < th dose independent rect. 2 1
81 384.27 radiation 30.0 90 < th dose dependent rect. 15 1
82 384.34 wind 9.0 30 < th dose independent rect. 3 23
85 384.50 wind 9.0 90 > th dose independent rect. 15 1
87 384.51 wind 9.0 90 > th dose dependent rect. 15 1
89 384.54 radiation 1.0 10 < th dose independent rect. 16 1
93 384.66 temperature 25.0 90 < th dose independent rect. 14 3
95 384.68 radiation 1.0 90 < th dose independent rect. 10 6
100 384.70 wind 9.0 10 > th dose independent rect. 15 1
108 384.70 wind 9.0 10 > th dose dependent rect. 15 1
119 384.77 radiation 1.0 10 < th dose dependent rect. 15 2
125 384.81 wind 9.0 90 < th dose independent rect. 14 14
156 384.99 wind 1.0 90 > th dose independent rect. 14 14
161 385.04 atmosphere 1005.0 30 > th dose dependent rect. 1 3
173 385.10 humidity 90.0 90 > th dose independent rect. 14 1
176 385.10 humidity 90.0 90 > th dose dependent rect. 14 1
204 385.63 radiation 1.0 90 < th dose dependent rect. 4 21
214 386.10 temperature 30.0 90 < th dose independent rect. 3 23
224 386.53 temperature 25.0 10 < th dose independent rect. 15 1
245 386.75 temperature 30.0 30 < th dose dependent rect. 2 1
252 386.79 radiation 40.0 90 < th dose dependent rect. 14 14
259 386.86 atmosphere 1015.0 30 < th dose independent rect. 4 22
279 387.10 humidity 50.0 90 > th dose independent rect. 3 23
289 387.22 radiation 1.0 90 < th dose independent rect. 4 21
291 387.25 temperature 25.0 270 < th dose dependent rect. 11 6
311 387.53 humidity 60.0 30 > th dose independent rect. 16 10
344 387.94 radiation 10.0 43200 < th dose dependent rect. 3 1
347 387.98 atmosphere 1005.0 30 > th dose dependent rect. 15 1
357 388.10 wind 9.0 1440 < th dose independent rect. 3 1
358 388.10 temperature 10.0 1440 > th dose independent rect. 3 1
361 388.10 temperature 30.0 1440 < th dose independent rect. 3 1
365 388.10 humidity 50.0 1440 > th dose independent rect. 3 1
374 388.10 atmosphere 995.0 1440 > th dose independent rect. 3 1
375 388.10 radiation 1.0 1440 < th dose independent rect. 3 1
395 388.10 temperature 10.0 1440 > th dose independent rect. 4 23
398 388.10 radiation 1.0 1440 < th dose dependent rect. 3 1
415 388.15 atmosphere 1005.0 90 > th dose dependent rect. 14 4
418 388.21 humidity 60.0 30 < th dose independent rect. 17 1
429 388.37 atmosphere 995.0 30 > th dose independent rect. 3 23
430 388.37 precipitation 0.1 90 < th dose independent rect. 3 23
431 388.37 precipitation 0.1 90 < th dose dependent rect. 3 23
432 388.38 humidity 50.0 30 > th dose independent rect. 14 14
446 388.53 atmosphere 1015.0 90 < th dose independent rect. 18 7
452 388.58 temperature 10.0 90 > th dose dependent rect. 18 7
459 388.69 wind 1.0 720 < th dose dependent rect. 21 1
489 388.86 radiation 1.0 30 < th dose dependent rect. 17 8
510 388.89 temperature 10.0 1440 > th dose independent rect. 5 10
513 388.89 temperature 10.0 1440 > th dose independent rect. 15 14
537 389.01 temperature 10.0 10 > th dose dependent rect. 19 7
545 389.14 humidity 60.0 90 < th dose dependent rect. 17 1
549 389.17 wind 9.0 90 < th dose dependent rect. 14 14
553 389.21 precipitation 0.1 90 < th dose independent rect. 1 17
554 389.21 precipitation 0.1 90 < th dose dependent rect. 1 17
594 389.26 radiation 1.0 90 < th dose independent rect. 17 8
601 389.30 humidity 60.0 30 > th dose independent rect. 15 1
627 389.37 atmosphere 995.0 90 > th dose independent rect. 1 17
637 389.42 atmosphere 1005.0 270 > th dose dependent rect. 15 1
650 389.44 atmosphere 1015.0 10 < th dose independent rect. 19 7
651 389.48 temperature 30.0 10 < th dose independent rect. 16 10
659 389.56 humidity 50.0 30 > th dose dependent rect. 15 1
753 389.80 atmosphere 1015.0 270 < th dose independent rect. 16 7
758 389.83 radiation 40.0 90 < th dose independent rect. 4 10
781 389.92 temperature 10.0 90 > th dose dependent rect. 4 10
786 389.94 atmosphere 995.0 270 > th dose independent rect. 23 17
792 389.96 radiation 1.0 30 < th dose dependent rect. 11 14
801 389.98 radiation 1.0 30 < th dose dependent rect. 13 12
851 390.09 humidity 50.0 90 > th dose independent rect. 16 22
869 390.16 humidity 70.0 10 > th dose independent rect. 12 14
886 390.25 temperature 15.0 90 > th dose independent rect. 1 17
889 390.26 atmosphere 1015.0 90 < th dose dependent rect. 18 7
899 390.35 wind 1.0 90 > th dose independent rect. 1 17
914 390.43 temperature 30.0 90 < th dose independent rect. 4 10
918 390.45 humidity 90.0 10 < th dose independent rect. 19 11
937 390.52 precipitation 0.1 270 < th dose independent rect. 23 17
940 390.52 precipitation 0.1 270 < th dose dependent rect. 23 17
944 390.54 temperature 10.0 90 > th dose independent rect. 18 7
947 390.54 radiation 20.0 90 < th dose independent rect. 18 7
951 390.54 atmosphere 1015.0 90 < th dose independent rect. 1 17
958 390.57 radiation 40.0 90 < th dose dependent rect. 18 7
959 390.58 atmosphere 995.0 90 > th dose independent rect. 18 7
962 390.59 humidity 90.0 10 < th dose independent rect. 19 13
968 390.61 wind 9.0 90 < th dose independent rect. 18 7
978 390.64 wind 1.0 4320 < th dose dependent rect. 21 2