BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0468600 Os05g0468600|Os05g0468600
         (850 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0468600  Conserved hypothetical protein                     1443   0.0  

>Os05g0468600 Conserved hypothetical protein
          Length = 850

 Score = 1443 bits (3735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/850 (84%), Positives = 719/850 (84%)

Query: 1   MASRTLPPPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA 60
           MASRTLPPPH                                                TA
Sbjct: 1   MASRTLPPPHLRLDLCSPRLPPLRSPGCRRRRRRGRVLSALSSPSPSPSSASRSQSVSTA 60

Query: 61  PLERGVGPGPATSREQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLRALDAETRVVE 120
           PLERGVGPGPATSREQP                              KLRALDAETRVVE
Sbjct: 61  PLERGVGPGPATSREQPRGGGDLALAAELARLSALRARLRGARSLADKLRALDAETRVVE 120

Query: 121 FFGEGSNGGVLGALEPREVFLLKCLVAAGQEHVLGAELDWXXXXXXXXXXXXXXXXXXXX 180
           FFGEGSNGGVLGALEPREVFLLKCLVAAGQEHVLGAELDW                    
Sbjct: 121 FFGEGSNGGVLGALEPREVFLLKCLVAAGQEHVLGAELDWDGRGHEHHHHHNGGSDGRSA 180

Query: 181 XXXXXXXXXXXVGKWXXXXXXXXXXXXXXXXXXXXXXKFLGDIDVFYDCIGGIIGYQIMA 240
                      VGKW                      KFLGDIDVFYDCIGGIIGYQIMA
Sbjct: 181 LRQALSSLAALVGKWSSEGVVEGVAESGESELLRRLLKFLGDIDVFYDCIGGIIGYQIMA 240

Query: 241 LELLSASKDHKHRPSKHKSIDFHVPSGLNLLEDTEYASQAALWGIEGLPELGEIYPIGGA 300
           LELLSASKDHKHRPSKHKSIDFHVPSGLNLLEDTEYASQAALWGIEGLPELGEIYPIGGA
Sbjct: 241 LELLSASKDHKHRPSKHKSIDFHVPSGLNLLEDTEYASQAALWGIEGLPELGEIYPIGGA 300

Query: 301 GDRLGLVDSDTGESLPAALLPYCGRSLLEGLIRDLQAREFLHFKIFGKQCITPVAIMTSS 360
           GDRLGLVDSDTGESLPAALLPYCGRSLLEGLIRDLQAREFLHFKIFGKQCITPVAIMTSS
Sbjct: 301 GDRLGLVDSDTGESLPAALLPYCGRSLLEGLIRDLQAREFLHFKIFGKQCITPVAIMTSS 360

Query: 361 VKDNHEHITAICERLEWFGRGRENFRLFEQPLVPVVNAKDGKWLTSGALFPVGKPGGHGA 420
           VKDNHEHITAICERLEWFGRGRENFRLFEQPLVPVVNAKDGKWLTSGALFPVGKPGGHGA
Sbjct: 361 VKDNHEHITAICERLEWFGRGRENFRLFEQPLVPVVNAKDGKWLTSGALFPVGKPGGHGA 420

Query: 421 IWKLACDRGIFQWLYQNGRKGATVRQVSNVVAATDLTLMALAGIGLRHDKKLGFASCERR 480
           IWKLACDRGIFQWLYQNGRKGATVRQVSNVVAATDLTLMALAGIGLRHDKKLGFASCERR
Sbjct: 421 IWKLACDRGIFQWLYQNGRKGATVRQVSNVVAATDLTLMALAGIGLRHDKKLGFASCERR 480

Query: 481 PGATEGVNVLIEKENQDGQWAYGITCIEYTEFEKYGIPEPTVTNGSAAGGRLECTMQNIA 540
           PGATEGVNVLIEKENQDGQWAYGITCIEYTEFEKYGIPEPTVTNGSAAGGRLECTMQNIA
Sbjct: 481 PGATEGVNVLIEKENQDGQWAYGITCIEYTEFEKYGIPEPTVTNGSAAGGRLECTMQNIA 540

Query: 541 DNFMNTYNYRCSKGIESELDTFIVYNERKKVTSSAKRKLKSEDKSLHQTPEGSLLDIMRN 600
           DNFMNTYNYRCSKGIESELDTFIVYNERKKVTSSAKRKLKSEDKSLHQTPEGSLLDIMRN
Sbjct: 541 DNFMNTYNYRCSKGIESELDTFIVYNERKKVTSSAKRKLKSEDKSLHQTPEGSLLDIMRN 600

Query: 601 AYDLLSSCNVKVPKVKDNCEYLRSGPPFLIFLHPALGPFWDITRQKFVGGSVSQGSELQI 660
           AYDLLSSCNVKVPKVKDNCEYLRSGPPFLIFLHPALGPFWDITRQKFVGGSVSQGSELQI
Sbjct: 601 AYDLLSSCNVKVPKVKDNCEYLRSGPPFLIFLHPALGPFWDITRQKFVGGSVSQGSELQI 660

Query: 661 EVAEFLWQDVELDGSLIVLADNIMGSTNKNNTGEQIMHYDETQNSMVVERCGRCKLQSVK 720
           EVAEFLWQDVELDGSLIVLADNIMGSTNKNNTGEQIMHYDETQNSMVVERCGRCKLQSVK
Sbjct: 661 EVAEFLWQDVELDGSLIVLADNIMGSTNKNNTGEQIMHYDETQNSMVVERCGRCKLQSVK 720

Query: 721 IVNKGINWSSANNVYWKHDVERSESVKIILHENAEFEAKDVVLKGNHIFEVPTGHRMRIV 780
           IVNKGINWSSANNVYWKHDVERSESVKIILHENAEFEAKDVVLKGNHIFEVPTGHRMRIV
Sbjct: 721 IVNKGINWSSANNVYWKHDVERSESVKIILHENAEFEAKDVVLKGNHIFEVPTGHRMRIV 780

Query: 781 QDGPEFVAKLDPISKEMMDSGTWYWKYAVDGAHVKLEMAAQVIGFSLTALSHMELIFWDS 840
           QDGPEFVAKLDPISKEMMDSGTWYWKYAVDGAHVKLEMAAQVIGFSLTALSHMELIFWDS
Sbjct: 781 QDGPEFVAKLDPISKEMMDSGTWYWKYAVDGAHVKLEMAAQVIGFSLTALSHMELIFWDS 840

Query: 841 LEYPIIQTCP 850
           LEYPIIQTCP
Sbjct: 841 LEYPIIQTCP 850



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,368,920
Number of extensions: 1081347
Number of successful extensions: 2227
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 1
Length of query: 850
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 741
Effective length of database: 11,344,475
Effective search space: 8406255975
Effective search space used: 8406255975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)