Os05g0468600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0468600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.08 | 0.523 | 9.79 | -0.717 | 1.67 | -1.06 | 1.73 | 6.16 | -0.262 | 20.6 | 25.42 | 1417 | -- | -- |
| 135.44 | 0.542 | 9.92 | -1.52 | 1.65 | -1.01 | 1.84 | -- | -0.309 | 20.6 | 9.422 | 47520 | -- | -- |
| 133.79 | 0.539 | 9.79 | -0.757 | 1.66 | -1.06 | -- | 6.13 | -0.248 | 20.5 | 25.28 | 1417 | -- | -- |
| 143.78 | 0.558 | 9.92 | -1.42 | 1.62 | -1.2 | -- | -- | -0.252 | 20.6 | 13.17 | 28842 | -- | -- |
| 289.07 | 0.792 | 9.83 | -1.29 | -- | -0.8 | -- | 4.1 | -0.335 | -- | 23.62 | 1440 | -- | -- |
| 146.31 | 0.567 | 10 | -2.59 | 1.65 | -- | 1.79 | -- | -0.729 | 20.6 | -- | -- | -- | -- |
| 156.54 | 0.586 | 10 | -2.65 | 1.65 | -- | -- | -- | -0.728 | 20.4 | -- | -- | -- | -- |
| 295.43 | 0.801 | 9.88 | -1.77 | -- | -0.943 | -- | -- | -0.36 | -- | 6.018 | 28841 | -- | -- |
| 163.04 | 0.595 | 9.8 | -- | 1.67 | -2.15 | -- | -- | 0.209 | 20.5 | 3.693 | 47520 | -- | -- |
| 308.47 | 0.821 | 9.97 | -2.66 | -- | -- | -- | -- | -0.744 | -- | -- | -- | -- | -- |
| 341.22 | 0.864 | 9.94 | -- | 1.66 | -- | -- | -- | -0.433 | 20.3 | -- | -- | -- | -- |
| 318.9 | 0.832 | 9.76 | -- | -- | -2.13 | -- | -- | 0.188 | -- | 3.352 | 47520 | -- | -- |
| 494.49 | 1.04 | 9.9 | -- | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.37 | radiation | 40 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 4 | 114.98 | radiation | 40 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 6 | 115.15 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 9 | 115.30 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 18 | 116.32 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 19 | 116.33 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 35 | 116.35 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 49 | 116.51 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 62 | 116.51 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 80 | 116.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 101 | 116.81 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 104 | 116.85 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 117 | 116.91 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 120 | 116.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 122 | 116.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 128 | 116.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 138 | 116.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 139 | 116.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 145 | 117.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 146 | 117.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 148 | 117.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 149 | 117.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 157 | 117.09 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 158 | 117.09 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 162 | 117.10 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 182 | 117.13 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 185 | 117.15 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 187 | 117.15 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 22 |
| 188 | 117.16 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 190 | 117.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 192 | 117.17 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 203 | 117.19 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 204 | 117.19 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 245 | 117.24 | radiation | 40 | 43200 | > th | dose dependent | sin | 17 | NA |
| 256 | 117.26 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 261 | 117.26 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 301 | 117.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 317 | 117.33 | temperature | 15 | 43200 | < th | dose independent | sin | 6 | NA |
| 322 | 117.33 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 401 | 117.36 | radiation | 40 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 403 | 117.37 | radiation | 40 | 43200 | < th | dose independent | sin | 14 | NA |
| 406 | 117.37 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 407 | 117.37 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 408 | 117.37 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |
| 411 | 117.37 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 8 |
| 417 | 117.37 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 558 | 117.38 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 561 | 117.38 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 676 | 117.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 699 | 117.48 | radiation | 10 | 43200 | < th | dose independent | sin | 9 | NA |
| 700 | 117.48 | radiation | 20 | 43200 | < th | dose independent | sin | 12 | NA |
| 725 | 117.49 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 747 | 117.50 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 752 | 117.50 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 788 | 117.51 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 802 | 117.52 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 816 | 117.52 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 821 | 117.53 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 828 | 117.53 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 829 | 117.53 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 854 | 117.55 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 872 | 117.57 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 875 | 117.57 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 924 | 117.60 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 975 | 117.64 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 979 | 117.64 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 15 |