BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0454400 Os05g0454400|AK107942
         (137 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0454400  Conserved hypothetical protein                      209   3e-55
Os02g0681632  Peptidoglycan-binding LysM domain containing p...   136   6e-33

>Os05g0454400 Conserved hypothetical protein
          Length = 137

 Score =  209 bits (533), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 105/137 (76%)

Query: 1   MASHXXXXXXXXXXXXTHEAATGEGYARAAGQPLLVPLKCGCPSRSPNAYSPMQYQINAG 60
           MASH            THEAATGEGYARAAGQPLLVPLKCGCPSRSPNAYSPMQYQINAG
Sbjct: 1   MASHEADGCAEEGGDETHEAATGEGYARAAGQPLLVPLKCGCPSRSPNAYSPMQYQINAG 60

Query: 61  DTFWIVSTTKLQNLKQYQAVERVNPTLVPTNLGIGQIDMFXXXXXXXXXXXXXXXXXXXX 120
           DTFWIVSTTKLQNLKQYQAVERVNPTLVPTNLGIGQIDMF                    
Sbjct: 61  DTFWIVSTTKLQNLKQYQAVERVNPTLVPTNLGIGQIDMFPAACSPPFPAACSPPFVAAA 120

Query: 121 WSPPSERCRCLVAGGRR 137
           WSPPSERCRCLVAGGRR
Sbjct: 121 WSPPSERCRCLVAGGRR 137



>Os02g0681632 Peptidoglycan-binding LysM domain containing protein
          Length = 262

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/72 (88%), Positives = 67/72 (93%)

Query: 29  AAGQPLLVPLKCGCPSRSPNAYSPMQYQINAGDTFWIVSTTKLQNLKQYQAVERVNPTLV 88
           AA QPLLVPL+CGCPSRSPNAY+PMQYQINAGDT+WIVSTTKLQNL QYQAVERVNPTLV
Sbjct: 94  AARQPLLVPLQCGCPSRSPNAYAPMQYQINAGDTYWIVSTTKLQNLTQYQAVERVNPTLV 153

Query: 89  PTNLGIGQIDMF 100
           PTNL IGQI  F
Sbjct: 154 PTNLDIGQIVTF 165



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,937,896
Number of extensions: 122012
Number of successful extensions: 279
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)