Os05g0454400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0454400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.88 | 0.569 | 9.16 | 0.572 | 0.577 | 1.55 | 0.249 | 1.42 | -0.412 | 10.4 | 22.1 | 1718 | -- | -- |
| 151.09 | 0.572 | 9.12 | 0.958 | 0.561 | 1.47 | 0.237 | -- | -0.313 | 10 | 22.16 | 1481 | -- | -- |
| 147.11 | 0.565 | 9.17 | 0.573 | 0.575 | 1.55 | -- | 1.44 | -0.415 | 10.5 | 22.1 | 1725 | -- | -- |
| 151.35 | 0.573 | 9.12 | 0.978 | 0.564 | 1.5 | -- | -- | -0.306 | 10.1 | 22.14 | 1479 | -- | -- |
| 153.25 | 0.577 | 9.17 | 0.614 | -- | 1.54 | -- | 1.11 | -0.4 | -- | 21.9 | 861 | -- | -- |
| 232.97 | 0.716 | 9.23 | 0.418 | 0.583 | -- | 0.157 | -- | -0.802 | 10.4 | -- | -- | -- | -- |
| 233.07 | 0.715 | 9.23 | 0.425 | 0.581 | -- | -- | -- | -0.801 | 10.5 | -- | -- | -- | -- |
| 157 | 0.584 | 9.13 | 0.91 | -- | 1.48 | -- | -- | -0.317 | -- | 22.13 | 854 | -- | -- |
| 170.05 | 0.607 | 9.17 | -- | 0.325 | 1.17 | -- | -- | -0.5 | 10.1 | 22.4 | 855 | -- | -- |
| 253.79 | 0.744 | 9.24 | 0.415 | -- | -- | -- | -- | -0.804 | -- | -- | -- | -- | -- |
| 237.82 | 0.721 | 9.24 | -- | 0.579 | -- | -- | -- | -0.849 | 10.5 | -- | -- | -- | -- |
| 176.6 | 0.619 | 9.16 | -- | -- | 1.27 | -- | -- | -0.458 | -- | 22.32 | 846 | -- | -- |
| 258.32 | 0.75 | 9.25 | -- | -- | -- | -- | -- | -0.85 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.35 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 150.44 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 29 | 154.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 31 | 154.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 32 | 154.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 35 | 154.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 37 | 154.95 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 45 | 155.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 48 | 155.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 49 | 155.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 51 | 155.20 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 65 | 155.78 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 82 | 156.11 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 90 | 156.30 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 98 | 156.50 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 291 | 159.10 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 438 | 159.79 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 451 | 159.87 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 496 | 160.12 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 504 | 160.17 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 511 | 160.21 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 516 | 160.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 535 | 160.30 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 744 | 161.31 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 748 | 161.33 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 910 | 162.19 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |