BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0445000 Os05g0445000|AK111423
         (229 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0445000  Conserved hypothetical protein                      237   6e-63

>Os05g0445000 Conserved hypothetical protein
          Length = 229

 Score =  237 bits (604), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 141/199 (70%), Positives = 141/199 (70%)

Query: 31  AAGVEAEGDLAYAVEREAAEDVLEIQQPLAPVAGGRAKQRDEAAPQFRGHDVRREGSYRR 90
           AAGVEAEGDLAYAVEREAAEDVLEIQQPLAPVAGGRAKQRDEAAPQFRGHDVRREGSYRR
Sbjct: 31  AAGVEAEGDLAYAVEREAAEDVLEIQQPLAPVAGGRAKQRDEAAPQFRGHDVRREGSYRR 90

Query: 91  RGELSRGELALXXXXXXXXXXXXXXXXXXXDGREGGTLGVVVEAAAQHVVDXXXXXXXXX 150
           RGELSRGELAL                   DGREGGTLGVVVEAAAQHVVD         
Sbjct: 91  RGELSRGELALEEPAVAVDVEYAAAEEVGEDGREGGTLGVVVEAAAQHVVDGGRVGGEHV 150

Query: 151 XXXXXXXXSPRRAAQQVRVPVAEVVELARPRRGHVXXXXXXXXXXXXXXXXXXXXXXEGH 210
                   SPRRAAQQVRVPVAEVVELARPRRGHV                      EGH
Sbjct: 151 PEHVHVHGSPRRAAQQVRVPVAEVVELARPRRGHVRLAHRARAPPRRPQPLQSQQQREGH 210

Query: 211 RARGRDEEDGGNLRLQGAR 229
           RARGRDEEDGGNLRLQGAR
Sbjct: 211 RARGRDEEDGGNLRLQGAR 229



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,450,012
Number of extensions: 173269
Number of successful extensions: 467
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 154 (63.9 bits)