BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0434800 Os05g0434800|Os05g0434800
         (97 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0434800  Hypothetical protein                                172   4e-44
Os05g0434600                                                       86   7e-18

>Os05g0434800 Hypothetical protein
          Length = 97

 Score =  172 bits (437), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 85/97 (87%)

Query: 1  MGAVVNNDCYVVKDGIFXXXXXXXXXXXXSGITSYVMLRRQADEAPAKQPPLAGVAMGQP 60
          MGAVVNNDCYVVKDGIF            SGITSYVMLRRQADEAPAKQPPLAGVAMGQP
Sbjct: 1  MGAVVNNDCYVVKDGIFAGAAVLALAATASGITSYVMLRRQADEAPAKQPPLAGVAMGQP 60

Query: 61 QFPPPPDSQLIYFDCFHKATFRGILKWQVDVIVSVES 97
          QFPPPPDSQLIYFDCFHKATFRGILKWQVDVIVSVES
Sbjct: 61 QFPPPPDSQLIYFDCFHKATFRGILKWQVDVIVSVES 97



>Os05g0434600 
          Length = 204

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 50/78 (64%), Gaps = 8/78 (10%)

Query: 1   MGAVVNN--------DCYVVKDGIFXXXXXXXXXXXXSGITSYVMLRRQADEAPAKQPPL 52
           +GAVVN         DCYVVK GIF             GITSYVMLR QADEAPAK+PPL
Sbjct: 127 VGAVVNIEGKGATMPDCYVVKRGIFAGAAVLALAATAFGITSYVMLRTQADEAPAKKPPL 186

Query: 53  AGVAMGQPQFPPPPDSQL 70
           AGVAMGQPQF PP  S +
Sbjct: 187 AGVAMGQPQFLPPQASHV 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,523,690
Number of extensions: 134084
Number of successful extensions: 789
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 2
Length of query: 97
Length of database: 17,035,801
Length adjustment: 66
Effective length of query: 31
Effective length of database: 13,589,677
Effective search space: 421279987
Effective search space used: 421279987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)