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Os05g0434800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.72 (0.0431) R2 : 0.499
β1 : -0.511 (0.211) R2dD : 0.014 R2D : -0.126
β2 : 1.85 (0.1) R2dC : 0.444 R2C : 0.315
β3 : 1.02 (0.183) R2dE : 0.0625 R2E : -0.198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.08 (1.21) R2dD*E : 0.127 R2D*E : -0.00105
γ1 : -0.79 (0.0932) R2dN8 : 0.136 R2N8 : 0.0295
σ : 0.725
deviance : 242.53
__
_____
C
peak time of C : 0.959
E
wheather : temperature
threshold : 24.83
memory length : 217
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.71 0.727 8.73 -0.552 1.84 0.854 -1 -8.48 -0.815 0.742 24.66 75 -- --
258.8 0.749 8.61 0.353 1.61 0.879 -0.0631 -- -0.616 0.898 14.3 709 -- --
242.53 0.725 8.72 -0.511 1.85 1.02 -- -8.08 -0.79 0.959 24.83 217 -- --
258.57 0.749 8.62 0.362 1.58 0.792 -- -- -0.62 0.612 14.03 969 -- --
398.16 0.934 8.58 0.373 -- -1.06 -- -3.62 -0.456 -- 24.21 937 -- --
267.6 0.767 8.59 0.584 1.71 -- -0.0362 -- -0.49 0.484 -- -- -- --
267.61 0.766 8.59 0.585 1.71 -- -- -- -0.49 0.484 -- -- -- --
398.52 0.93 8.63 0.139 -- 1.79 -- -- -0.751 -- 14.5 943 -- --
261.21 0.753 8.64 -- 1.64 0.795 -- -- -0.682 0.423 14.13 2705 -- --
450.4 0.992 8.56 0.644 -- -- -- -- -0.461 -- -- -- -- --
276.63 0.778 8.61 -- 1.72 -- -- -- -0.555 0.501 -- -- -- --
399 0.93 8.63 -- -- 1.84 -- -- -0.774 -- 14.48 945 -- --
461.35 1 8.58 -- -- -- -- -- -0.533 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.90 wind 1.0 43200 < th dose independent rect. 13 12
2 232.03 wind 1.0 43200 > th dose independent rect. 14 11
4 232.29 wind 1.0 43200 < th dose dependent rect. 11 14
5 232.46 wind 1.0 43200 > th dose independent rect. 9 2
9 232.63 wind 9.0 43200 > th dose dependent rect. 16 4
15 232.80 humidity 70.0 43200 > th dose dependent rect. 19 3
17 232.89 humidity 70.0 43200 > th dose dependent rect. 20 1
18 232.91 radiation 30.0 14400 < th dose dependent rect. 22 7
26 233.51 wind 9.0 43200 > th dose independent rect. 16 12
28 233.53 wind 9.0 43200 > th dose independent rect. 16 9
30 233.53 humidity 70.0 43200 > th dose dependent rect. 18 5
31 233.54 wind 1.0 43200 < th dose independent rect. 9 2
34 233.55 wind 9.0 43200 < th dose independent rect. 16 12
40 233.62 wind 9.0 43200 > th dose dependent rect. 18 3
41 233.64 radiation 10.0 14400 > th dose independent rect. 6 1
44 233.68 wind 9.0 43200 < th dose independent rect. 16 9
49 233.74 wind 9.0 43200 < th dose independent rect. 18 3
50 233.79 wind 9.0 43200 > th dose independent rect. 17 3
53 233.81 atmosphere 1005.0 43200 < th dose independent rect. 9 2
55 233.84 wind 9.0 14400 > th dose dependent rect. 13 1
59 234.02 wind 9.0 43200 > th dose dependent rect. 18 5
85 234.19 wind 1.0 43200 < th dose dependent rect. 6 1
95 234.41 wind 3.0 43200 < th dose dependent rect. 18 3
106 234.66 wind 1.0 43200 < th dose dependent sin 18 NA
124 234.97 wind 3.0 43200 < th dose dependent rect. 20 1
128 235.00 humidity 60.0 43200 > th dose dependent rect. 8 18
144 235.16 wind 7.0 43200 > th dose dependent rect. 17 8
145 235.17 humidity 80.0 43200 < th dose independent rect. 8 1
164 235.31 wind 5.0 270 < th dose independent rect. 6 9
167 235.33 atmosphere 1005.0 43200 > th dose independent rect. 9 1
169 235.34 wind 7.0 43200 > th dose dependent rect. 19 1
177 235.37 wind 7.0 43200 > th dose dependent rect. 17 11
178 235.38 wind 7.0 43200 > th dose independent rect. 19 1
188 235.43 humidity 80.0 43200 > th dose independent rect. 8 1
208 235.56 humidity 60.0 43200 > th dose dependent sin 17 NA
210 235.59 humidity 70.0 43200 > th dose independent rect. 10 5
235 235.74 radiation 1.0 14400 < th dose dependent rect. 23 6
241 235.82 wind 1.0 43200 < th dose dependent rect. 13 10
245 235.85 wind 3.0 43200 < th dose dependent rect. 17 5
248 235.87 humidity 60.0 43200 > th dose dependent rect. 4 21
261 235.95 precipitation 0.1 43200 > th dose independent rect. 18 2
266 235.97 humidity 80.0 43200 < th dose independent rect. 3 9
282 236.07 precipitation 0.1 43200 < th dose independent rect. 18 2
283 236.07 precipitation 0.1 43200 < th dose dependent rect. 18 2
314 236.25 temperature 20.0 30 > th dose dependent rect. 9 11
325 236.33 wind 5.0 43200 < th dose dependent rect. 15 6
342 236.45 wind 3.0 43200 > th dose independent rect. 16 1
347 236.48 temperature 20.0 10 > th dose dependent rect. 9 9
356 236.50 temperature 20.0 10 > th dose dependent rect. 7 9
371 236.59 humidity 80.0 43200 > th dose independent rect. 15 10
381 236.63 radiation 1.0 14400 < th dose dependent rect. 19 10
391 236.67 wind 3.0 43200 > th dose independent rect. 14 3
393 236.68 radiation 40.0 43200 < th dose dependent rect. 19 10
396 236.69 wind 5.0 43200 < th dose dependent rect. 15 1
402 236.71 humidity 70.0 43200 < th dose independent rect. 11 4
413 236.75 humidity 90.0 43200 < th dose dependent rect. 18 2
414 236.75 temperature 20.0 10 > th dose dependent rect. 7 11
417 236.76 humidity 80.0 43200 < th dose independent rect. 7 3
425 236.80 humidity 80.0 43200 < th dose independent rect. 14 22
429 236.81 precipitation 0.1 43200 > th dose dependent rect. 18 2
434 236.83 humidity 60.0 43200 > th dose dependent no NA NA
459 236.89 wind 1.0 43200 < th dose independent sin 17 NA
463 236.89 humidity 60.0 43200 > th dose dependent rect. 16 23
484 236.95 humidity 80.0 43200 > th dose independent rect. 14 22
499 237.03 precipitation 0.1 43200 < th dose independent rect. 16 4
500 237.03 wind 3.0 43200 > th dose independent rect. 15 6
502 237.03 precipitation 0.1 43200 < th dose dependent rect. 16 4
527 237.11 humidity 70.0 43200 > th dose independent rect. 3 13
531 237.12 humidity 80.0 43200 > th dose independent rect. 5 6
544 237.16 wind 1.0 43200 > th dose independent sin 17 NA
560 237.20 wind 1.0 43200 > th dose dependent rect. 15 2
562 237.21 wind 3.0 43200 < th dose independent rect. 14 3
566 237.22 radiation 10.0 4320 < th dose independent rect. 22 7
576 237.26 temperature 15.0 1440 > th dose independent rect. 4 3
597 237.32 humidity 90.0 43200 < th dose dependent rect. 17 6
620 237.39 humidity 60.0 43200 > th dose dependent sin 3 NA
655 237.49 wind 1.0 43200 > th dose independent rect. 8 17
710 237.61 humidity 90.0 14400 < th dose dependent rect. 3 1
748 237.72 precipitation 0.1 43200 > th dose dependent rect. 14 6
755 237.73 temperature 20.0 270 > th dose dependent rect. 6 7
756 237.73 humidity 60.0 43200 > th dose dependent rect. 3 10
777 237.76 humidity 80.0 43200 < th dose independent rect. 18 21
780 237.77 humidity 80.0 43200 > th dose independent rect. 3 9
898 238.02 humidity 90.0 43200 < th dose dependent rect. 13 10
927 238.08 humidity 80.0 43200 > th dose independent rect. 20 1
936 238.10 humidity 70.0 43200 > th dose independent rect. 9 16
961 238.16 humidity 80.0 43200 > th dose independent sin 16 NA
969 238.17 humidity 90.0 43200 < th dose dependent rect. 14 1