BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0429100 Os05g0429100|AK100059
         (110 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0429100  Conserved hypothetical protein                       86   6e-18
Os04g0514101  Conserved hypothetical protein                       74   3e-14
Os03g0743650  Conserved hypothetical protein                       72   1e-13

>Os05g0429100 Conserved hypothetical protein
          Length = 110

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 50/98 (51%)

Query: 1  MAVEVGSXXXXXXXXXXXXXXXXXXPMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEW 60
          MAVEVGS                  PME                              EW
Sbjct: 1  MAVEVGSAREARAAEMEAGLAREARPMEGGQIGARDASGGGGRLGARGAAGGGGGDLGEW 60

Query: 61 RSCWWVWCGLRRTKASRWRAPVQGSHMSAEVDWRWSIG 98
          RSCWWVWCGLRRTKASRWRAPVQGSHMSAEVDWRWSIG
Sbjct: 61 RSCWWVWCGLRRTKASRWRAPVQGSHMSAEVDWRWSIG 98



>Os04g0514101 Conserved hypothetical protein
          Length = 107

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 39/52 (75%)

Query: 59  EWRSCWWVWCGLRRTKASRWRAPVQGSHMSAEVDWRWSIGXXXXXXXXXXGR 110
           EWRSCWWVW GLRRTKASR RAPVQGSHMSAEVDW WSIG          GR
Sbjct: 56  EWRSCWWVWRGLRRTKASRRRAPVQGSHMSAEVDWWWSIGVLAVVSQVVSGR 107



>Os03g0743650 Conserved hypothetical protein
          Length = 115

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 36/40 (90%)

Query: 59  EWRSCWWVWCGLRRTKASRWRAPVQGSHMSAEVDWRWSIG 98
           EWRSC WVW GLRRTKASR RAPVQGSHMS EVDW+WSIG
Sbjct: 64  EWRSCQWVWRGLRRTKASRRRAPVQGSHMSTEVDWQWSIG 103



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.132    0.526 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,870,656
Number of extensions: 42632
Number of successful extensions: 206
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 8
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)