Os05g0429100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0429100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.12 | 0.266 | 13.4 | 0.776 | 0.588 | -0.704 | -0.154 | 0.0346 | 0.547 | 22.4 | 24.6 | 12 | -- | -- |
| 32.12 | 0.264 | 13.4 | 0.773 | 0.587 | -0.7 | -0.157 | -- | 0.549 | 22.4 | 24.5 | 12 | -- | -- |
| 32.21 | 0.264 | 13.4 | 0.796 | 0.588 | -0.706 | -- | 0.148 | 0.554 | 22.4 | 24.51 | 12 | -- | -- |
| 32.22 | 0.264 | 13.4 | 0.777 | 0.587 | -0.696 | -- | -- | 0.548 | 22.4 | 24.5 | 10 | -- | -- |
| 51.15 | 0.335 | 13.4 | 0.908 | -- | -1.02 | -- | 0.661 | 0.612 | -- | 24.11 | 8 | -- | -- |
| 39.62 | 0.295 | 13.4 | 0.667 | 0.74 | -- | 0.016 | -- | 0.475 | 23.8 | -- | -- | -- | -- |
| 39.62 | 0.295 | 13.4 | 0.666 | 0.74 | -- | -- | -- | 0.475 | 23.8 | -- | -- | -- | -- |
| 51.29 | 0.334 | 13.4 | 0.836 | -- | -0.951 | -- | -- | 0.6 | -- | 23.1 | 3 | -- | -- |
| 47.2 | 0.322 | 13.4 | -- | 0.634 | -0.515 | -- | -- | 0.418 | 23 | 25.8 | 16 | -- | -- |
| 74.1 | 0.402 | 13.4 | 0.688 | -- | -- | -- | -- | 0.485 | -- | -- | -- | -- | -- |
| 51.32 | 0.335 | 13.5 | -- | 0.748 | -- | -- | -- | 0.401 | 23.8 | -- | -- | -- | -- |
| 68.8 | 0.386 | 13.4 | -- | -- | -0.84 | -- | -- | 0.474 | -- | 24.5 | 2 | -- | -- |
| 86.57 | 0.434 | 13.4 | -- | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 2 | 31.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 4 | 31.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 7 | 31.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 9 | 31.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 12 | 32.00 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 13 | 32.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 20 | 32.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 32 | 32.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 41 | 32.19 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 80 | 32.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 81 | 32.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 160 | 32.55 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 233 | 32.71 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 270 | 32.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 302 | 32.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 377 | 33.03 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 383 | 33.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 430 | 33.19 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 446 | 33.22 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 464 | 33.27 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 476 | 33.29 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 502 | 33.33 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 699 | 33.68 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 700 | 33.68 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 19 |
| 708 | 33.69 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 16 |
| 721 | 33.72 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 723 | 33.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 726 | 33.73 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 746 | 33.74 | temperature | 30 | 720 | > th | dose dependent | sin | 7 | NA |
| 832 | 33.85 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 877 | 33.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 893 | 33.89 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 914 | 33.90 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 916 | 33.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 986 | 33.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 10 |