BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0427900 Os05g0427900|AK067448
         (169 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0427900  Conserved hypothetical protein                       68   3e-12

>Os05g0427900 Conserved hypothetical protein
          Length = 169

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 50/121 (41%)

Query: 49  VHHLGEEAQGVXXXXXXXXXXXXXXXXXXXHRLVLLLPADRRREDELHVPRRGHLXXXXX 108
           VHHLGEEAQGV                   HRLVLLLPADRRREDELHVPRRGHL     
Sbjct: 49  VHHLGEEAQGVQEERQRPGAQGRGAAGERAHRLVLLLPADRRREDELHVPRRGHLPRVRE 108

Query: 109 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPQEXXXXXXXXXXXXXXSLSVIELPH 168
                                            LPQE              SLSVIELPH
Sbjct: 109 GGRRRGHARRRRRRRRREGRRRARRPPGEVRRRLPQEPHRRAARRPRQHPQSLSVIELPH 168

Query: 169 A 169
           A
Sbjct: 169 A 169



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,755,427
Number of extensions: 26236
Number of successful extensions: 41
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 152 (63.2 bits)