BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0426800 Os05g0426800|Os05g0426800
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0426800  Conserved hypothetical protein                      192   2e-49
Os01g0878000  Conserved hypothetical protein                       85   3e-17

>Os05g0426800 Conserved hypothetical protein
          Length = 190

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 109/190 (57%)

Query: 1   MSGFAGQRSRPWMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNASA 60
           MSGFAGQRSRPWM                                         STNASA
Sbjct: 1   MSGFAGQRSRPWMGDAAASDQAAAGGVGGGGGDVRDDGDGGAASAAAAKGLGDASTNASA 60

Query: 61  ISFGFAATAILISMFLLMAIFEHLIKPXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXX 120
           ISFGFAATAILISMFLLMAIFEHLIKP                R                
Sbjct: 61  ISFGFAATAILISMFLLMAIFEHLIKPSLSSSSSSSSSSSSSSRASHGDGDGHGQSSSSH 120

Query: 121 XXXXXXXXVSPDKLFCTPGKLEVVPAEDLTVLMPGQRYPTFLAQPAPLLPWPREGVRWPP 180
                   VSPDKLFCTPGKLEVVPAEDLTVLMPGQRYPTFLAQPAPLLPWPREGVRWPP
Sbjct: 121 HAAAAAAGVSPDKLFCTPGKLEVVPAEDLTVLMPGQRYPTFLAQPAPLLPWPREGVRWPP 180

Query: 181 HGHRHCFVPP 190
           HGHRHCFVPP
Sbjct: 181 HGHRHCFVPP 190



>Os01g0878000 Conserved hypothetical protein
          Length = 158

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 73/140 (52%), Gaps = 27/140 (19%)

Query: 56  TNASAISFGFAATAILISMFLLMAIFEHLIKPXXXXXXXXXXXXXXXXRXXXXXXXXXXX 115
           T+  AISFGFAATAIL+SMFLLMAIFEHLIKP                R           
Sbjct: 41  TSMDAISFGFAATAILVSMFLLMAIFEHLIKPHVFPPLASAALRPARRRHG--------- 91

Query: 116 XXXXXXXXXXXXXVSPDKLFCTPGKLE-VVPAEDLTVLMPGQRYPTF--LAQPAPLLPWP 172
                        VSP     +P  +E V+ A DL+VLMPGQRYPT+     P P  P P
Sbjct: 92  -------------VSPAGKLRSPPMVETVLQAADLSVLMPGQRYPTYLAQPAPLPPAPCP 138

Query: 173 REGVRWPPHGH--RHCFVPP 190
           REGV WPPH H   H ++PP
Sbjct: 139 REGVHWPPHDHDVHHSYMPP 158



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.141    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,134,651
Number of extensions: 141047
Number of successful extensions: 438
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)