BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0421300 Os05g0421300|AK103376
         (601 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0421300  Armadillo-like helical domain containing protein   1252   0.0  
Os03g0207800                                                      411   e-115

>Os05g0421300 Armadillo-like helical domain containing protein
          Length = 601

 Score = 1252 bits (3240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/601 (100%), Positives = 601/601 (100%)

Query: 1   MEKIQSDCPYPGCFFCVMKEANPSKRRASVLKFFRELPSQDDDGQVLPISGLWNTAMAHP 60
           MEKIQSDCPYPGCFFCVMKEANPSKRRASVLKFFRELPSQDDDGQVLPISGLWNTAMAHP
Sbjct: 1   MEKIQSDCPYPGCFFCVMKEANPSKRRASVLKFFRELPSQDDDGQVLPISGLWNTAMAHP 60

Query: 61  NDPEFINLGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAERAVR 120
           NDPEFINLGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAERAVR
Sbjct: 61  NDPEFINLGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAERAVR 120

Query: 121 AGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPAVADHGEVLELAIQLASSSLEI 180
           AGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPAVADHGEVLELAIQLASSSLEI
Sbjct: 121 AGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPAVADHGEVLELAIQLASSSLEI 180

Query: 181 VYSHFYQFVDRRIGYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKSEFLH 240
           VYSHFYQFVDRRIGYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKSEFLH
Sbjct: 181 VYSHFYQFVDRRIGYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKSEFLH 240

Query: 241 DICKADFLVKLPGMWGGLVNENSPAGVGLLRTICQSKLGRGHVANIPSVVEALCNIARSS 300
           DICKADFLVKLPGMWGGLVNENSPAGVGLLRTICQSKLGRGHVANIPSVVEALCNIARSS
Sbjct: 241 DICKADFLVKLPGMWGGLVNENSPAGVGLLRTICQSKLGRGHVANIPSVVEALCNIARSS 300

Query: 301 DDWQYMAVDCLLWLVQDSNTCHKVIDRVASTLIDLANISMLGDYKKLGDTIVTVLQECMQ 360
           DDWQYMAVDCLLWLVQDSNTCHKVIDRVASTLIDLANISMLGDYKKLGDTIVTVLQECMQ
Sbjct: 301 DDWQYMAVDCLLWLVQDSNTCHKVIDRVASTLIDLANISMLGDYKKLGDTIVTVLQECMQ 360

Query: 361 QYANSRNSISTHTKEQIDELLSSKQSFKLEKNMPKEDLHIKQAAALVVKLEGNSLFSSGN 420
           QYANSRNSISTHTKEQIDELLSSKQSFKLEKNMPKEDLHIKQAAALVVKLEGNSLFSSGN
Sbjct: 361 QYANSRNSISTHTKEQIDELLSSKQSFKLEKNMPKEDLHIKQAAALVVKLEGNSLFSSGN 420

Query: 421 IAGAAAKYSEALALCPMKSKKERVVLYSNRAQCYLLLQQPLAAISDATRALCLHSPLNRH 480
           IAGAAAKYSEALALCPMKSKKERVVLYSNRAQCYLLLQQPLAAISDATRALCLHSPLNRH
Sbjct: 421 IAGAAAKYSEALALCPMKSKKERVVLYSNRAQCYLLLQQPLAAISDATRALCLHSPLNRH 480

Query: 481 AKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLKQNKVPDYAERLVKKQMRT 540
           AKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLKQNKVPDYAERLVKKQMRT
Sbjct: 481 AKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLKQNKVPDYAERLVKKQMRT 540

Query: 541 AWLFREAALKHGGIHCEGEASDAFGQEADDSEWETASESDAENDATGEADDETEWKNDNQ 600
           AWLFREAALKHGGIHCEGEASDAFGQEADDSEWETASESDAENDATGEADDETEWKNDNQ
Sbjct: 541 AWLFREAALKHGGIHCEGEASDAFGQEADDSEWETASESDAENDATGEADDETEWKNDNQ 600

Query: 601 V 601
           V
Sbjct: 601 V 601



>Os03g0207800 
          Length = 707

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/570 (42%), Positives = 319/570 (55%), Gaps = 40/570 (7%)

Query: 13  CFFCVMKEANPSKRRASVLKFFRELP----------------SQDDDGQVLPISGLWNTA 56
           CF C +KE +   RRAS+  FFRELP                     G+V  +  +W  A
Sbjct: 48  CFLCAIKEPDARLRRASLAAFFRELPYCEDDDAGAGAGAGVDGGRSCGEV--VGAVWRAA 105

Query: 57  MAHPNDPEFINLGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAE 116
           MA P+DPE  +LG   CMS L+ + L +  W    +N+Y+PYYAAH+IGSYT+     AE
Sbjct: 106 MAAPDDPELPSLGAIRCMSLLLARALADVEWRRRGRNVYVPYYAAHVIGSYTIRSSAHAE 165

Query: 117 RAVRAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPAVADH-GEVLELAIQLAS 175
            AV AG + PL+  L G +TWVEQR A RALGHLA+Y +TFPAVA H  E + LA++ AS
Sbjct: 166 LAVAAGAVRPLLAFLGGAMTWVEQRAAARALGHLASYDATFPAVARHAAEAVPLAVRAAS 225

Query: 176 SSLEIVYSHFYQFV-DRRIGYHCDLLTR------GMGGVEMESRKAEEWASQLQCWSLQL 228
           + +  VY+ F      +R  Y  DLLTR      G    + E RKAEEWASQLQCWSL  
Sbjct: 226 TCVGNVYASFVALAPSKRPKYQRDLLTRGLDGGGGGVVADGEERKAEEWASQLQCWSLYF 285

Query: 229 INCFAFKSEFLHDICKAD--FLVKLPGMWGGLVNENSPAGVGLLRTICQSKLGRGHVANI 286
           ++C A +    H     D  FL +L  MWGGL N +SPAGVGLLR +C+S  GR  +A  
Sbjct: 286 LSCLASRDVSSHATICHDPVFLRELCQMWGGLANGDSPAGVGLLRLLCRSTAGRAAIAAC 345

Query: 287 PSVVEALCNIARSSDDWQYMAVDCLLWLVQDSNTCHKVIDRVASTLIDLANISMLGDYKK 346
              +  LC++ARSSDDWQYMA+DCLL L+ D  T H V D  A+ L+DLA +  LG  ++
Sbjct: 346 RDALSGLCDLARSSDDWQYMAIDCLLLLLDDRETWHAVADATAARLVDLAELRHLGPRRR 405

Query: 347 LGDTIVTVLQECMQQYANS---RNSISTHTKEQIDELLSSKQSFK-LEKNMPKEDLHIKQ 402
           LG+ I   L                +    KE I  L   +   K  E  M +++L  ++
Sbjct: 406 LGNAITAALLLDDGDDDGDIVHGRELGMEAKEAIARLREVQVERKGREDAMSRDELLKRR 465

Query: 403 AAALVVKLEGNSLFSSGNIAGAAAKYSEALALCPMKSKKERVVLYSNRAQCYLLLQQPLA 462
             A   K +GN +F  G +  A   Y+EAL LCP+  ++ER+VL+SNRAQC L  +   A
Sbjct: 466 IMAKEKKRQGNDMFWHGEVEKAIELYTEALELCPLSRRRERLVLHSNRAQCRLARRDADA 525

Query: 463 AISDATRALCLHSP-LNRHAKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSL 521
           A+ DATRAL L  P  N HA+SLWRRAQAYDM G+A+ESLLD + F        D   + 
Sbjct: 526 AVGDATRALSLARPAANAHARSLWRRAQAYDMKGMARESLLDCLAFAGAWLNRKDGTAAA 585

Query: 522 KQN-------KVPDYAERLVKKQMRTAWLF 544
                     K+P    R++ KQM    LF
Sbjct: 586 AAAASRGGNPKLPYCVARMISKQMGLTGLF 615



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,491,612
Number of extensions: 833687
Number of successful extensions: 2787
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2779
Number of HSP's successfully gapped: 2
Length of query: 601
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 494
Effective length of database: 11,448,903
Effective search space: 5655758082
Effective search space used: 5655758082
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)