BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0414600 Os05g0414600|AK070176
         (229 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0414600  Conserved hypothetical protein                      445   e-125
Os02g0513700  Zinc finger, BED-type predicted domain contain...    80   2e-15
Os11g0610800                                                       79   4e-15
Os08g0321200                                                       78   5e-15

>Os05g0414600 Conserved hypothetical protein
          Length = 229

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/229 (95%), Positives = 218/229 (95%)

Query: 1   MEGEDESPSPGENELPLWGHVKILDGFAPRCGTNMRFLCDYCSCVFRGSYSTVKAHLLKI 60
           MEGEDESPSPGENELPLWGHVKILDGFAPRCGTNMRFLCDYCSCVFRGSYSTVKAHLLKI
Sbjct: 1   MEGEDESPSPGENELPLWGHVKILDGFAPRCGTNMRFLCDYCSCVFRGSYSTVKAHLLKI 60

Query: 61  SKQGVPACPGVTFNILMKLSSEVDAAEDSILIQVRKKRNVTESCSSDYSGDEPESCSSDY 120
           SKQGVPACPGVTFNILMKLSSEVDAAEDSILIQVRKKRNVTESCSSDYSGDEPESCSSDY
Sbjct: 61  SKQGVPACPGVTFNILMKLSSEVDAAEDSILIQVRKKRNVTESCSSDYSGDEPESCSSDY 120

Query: 121 SGDAPCMGKVIVQAKRKKSRAECRDNFDAQFARMFYSSGYYLKLKNLYIFLLGTCISLHI 180
           SGDAPCMGKVIVQAKRKKSRAECRDNFDAQFARMFYSSGYYLKLKNLYIFLLGTCISLHI
Sbjct: 121 SGDAPCMGKVIVQAKRKKSRAECRDNFDAQFARMFYSSGYYLKLKNLYIFLLGTCISLHI 180

Query: 181 TGYSVYVVSIALHFLFYLSRLVLQLCKGPILPXXXXXXXXXXXSWLCSS 229
           TGYSVYVVSIALHFLFYLSRLVLQLCKGPILP           SWLCSS
Sbjct: 181 TGYSVYVVSIALHFLFYLSRLVLQLCKGPILPEFIFFYFEEYYSWLCSS 229



>Os02g0513700 Zinc finger, BED-type predicted domain containing protein
          Length = 675

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 20/152 (13%)

Query: 8   PSPGENELPLWGHVKILDGFAPRCGTNMRFLCDYCSCVFRGSYSTVKAHLLKISKQGVPA 67
           P+  EN+ PLW +V++++      G N+RF C  C  +  GSYS VKAHLLK+   GV  
Sbjct: 52  PNDNENK-PLWRYVELMEKTGKGQGGNVRFRCRLCGNIMHGSYSRVKAHLLKVGSNGVAP 110

Query: 68  CPGVTFNILMKLSSEVDAAEDSILIQVRKKRNVTESCSSDYSGDEPESCSSDYSGDAPCM 127
           CP VT ++L +L  E+  A          +RN+ +        D P        G     
Sbjct: 111 CPKVTIDVLSQLHDEMARA------AAVAERNLPK--------DIPLPAEGASRGK---- 152

Query: 128 GKVIVQAKRKKSRAECRDNFDAQFARMFYSSG 159
            +  V A      ++ R N DA  ARMFY++G
Sbjct: 153 -RRAVSAIESSFNSDTRSNLDALIARMFYTAG 183



>Os11g0610800 
          Length = 749

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 33/159 (20%)

Query: 8   PSPGENELPLWGHVKILDGFAPRCGTNMRFLCDYCSCVFRGSYSTVKAHLLKISKQGVPA 67
           P   + + PLW +V++L+      G N RF C +C+ V  GSYS VKAHLLKI   GV  
Sbjct: 51  PPNDDEKKPLWRYVELLEKTGKGQGGNARFRCRFCNQVIHGSYSRVKAHLLKIGTIGVAT 110

Query: 68  CPGVTFNILMKLSSEVDAAEDSILIQVRKKRNVTESCSSDYSGDEPESCSSDYSGDAPCM 127
           C  VT +IL +L  E+  AE          RN+ +                    D P  
Sbjct: 111 CKKVTVDILGQLQDEMTRAE------AISARNLPK--------------------DIPLP 144

Query: 128 GKVIVQAKRKKSRA-------ECRDNFDAQFARMFYSSG 159
            + + + KR+   A       + R   DA  ARMFY+SG
Sbjct: 145 TESVSRGKRRAVSAIESSFNLDARAKLDALIARMFYTSG 183



>Os08g0321200 
          Length = 687

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 33/159 (20%)

Query: 8   PSPGENELPLWGHVKILDGFAPRCGTNMRFLCDYCSCVFRGSYSTVKAHLLKISKQGVPA 67
           P   + + PLW +V++L+      G N RF C +C+ V  GSYS VKAHLLKI   GV  
Sbjct: 70  PPNDDEKKPLWRYVELLEKTGKGEGGNARFRCRFCNQVIHGSYSRVKAHLLKIGTIGVAT 129

Query: 68  CPGVTFNILMKLSSEVDAAEDSILIQVRKKRNVTESCSSDYSGDEPESCSSDYSGDAPCM 127
           C  VT +IL +L  E+  AE          RN+ +                    D P  
Sbjct: 130 CKKVTVDILGQLQDEMTRAE------AISARNLPK--------------------DIPLP 163

Query: 128 GKVIVQAKRKKSRA-------ECRDNFDAQFARMFYSSG 159
            + + + KR+   A       + R   DA  ARMFY+SG
Sbjct: 164 TESVSRGKRRAVSAIESSFNLDARAKLDALIARMFYTSG 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,609,733
Number of extensions: 286365
Number of successful extensions: 654
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 4
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)