BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0409300 Os05g0409300|AK065214
(184 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0409300 Similar to Cysteine protease inhibitor 283 5e-77
Os01g0270100 Similar to Cysteine protease inhibitor 93 9e-20
Os01g0803200 Cysteine proteinase inhibitor-I (Oryzacystatin-I) 69 2e-12
AK105278 69 2e-12
>Os05g0409300 Similar to Cysteine protease inhibitor
Length = 184
Score = 283 bits (724), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/184 (77%), Positives = 142/184 (77%)
Query: 1 MLRRRGFCCCSGXXXXXXXXXXXXXXXXXXXXXXGFHLGGDESVLVRGMLXXXXXXXXXX 60
MLRRRGFCCCSG GFHLGGDESVLVRGML
Sbjct: 1 MLRRRGFCCCSGAPAAAAAALLLLAVAAAAPRAAGFHLGGDESVLVRGMLAAIRREQAEA 60
Query: 61 XXXXXXXXXXYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKP 120
YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKP
Sbjct: 61 EDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKP 120
Query: 121 WLDFKAVVEFRHVGDSQSQSATAADDNAGQDTADPTVASRNDLHNTENNKVSVVLSTFSQ 180
WLDFKAVVEFRHVGDSQSQSATAADDNAGQDTADPTVASRNDLHNTENNKVSVVLSTFSQ
Sbjct: 121 WLDFKAVVEFRHVGDSQSQSATAADDNAGQDTADPTVASRNDLHNTENNKVSVVLSTFSQ 180
Query: 181 TYSV 184
TYSV
Sbjct: 181 TYSV 184
>Os01g0270100 Similar to Cysteine protease inhibitor
Length = 250
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 52/66 (78%)
Query: 71 YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEF 130
+NK + A LEF R+V+AK QVV GTLH L LE +++G+K +Y AKVWVKPWLDFK + EF
Sbjct: 74 HNKRENALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPWLDFKELQEF 133
Query: 131 RHVGDS 136
R+ GD+
Sbjct: 134 RNTGDA 139
>Os01g0803200 Cysteine proteinase inhibitor-I (Oryzacystatin-I)
Length = 140
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 71 YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEF 130
+NK + LEF ++V K+QVV GTL+ +EV + K LY AKVW KPW+DFK + EF
Sbjct: 72 HNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEF 131
Query: 131 RHVGDS 136
+ V S
Sbjct: 132 KPVDAS 137
>AK105278
Length = 102
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 71 YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEF 130
+NK + LEF ++V K+QVV GTL+ +EV + K LY AKVW KPW+DFK + EF
Sbjct: 34 HNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEF 93
Query: 131 RHVGDS 136
+ V S
Sbjct: 94 KPVDAS 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,321,940
Number of extensions: 127713
Number of successful extensions: 377
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)