BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0404400 Os05g0404400|AK065418
         (239 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0404400  Conserved hypothetical protein                      340   4e-94

>Os05g0404400 Conserved hypothetical protein
          Length = 239

 Score =  340 bits (873), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 175/239 (73%), Positives = 175/239 (73%)

Query: 1   MYSPLGSGCXXXXXXXXXXXXXTVPGGIFAGXXXXXPARLVLAWXXXXXXXXXXXXXXXX 60
           MYSPLGSGC             TVPGGIFAG     PARLVLAW                
Sbjct: 1   MYSPLGSGCAFAAAASSAFPPATVPGGIFAGRRRRRPARLVLAWASSDGSDGGGAAAGAV 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPVDPKIEKELKKAVQKTAATFAPRASTA 120
                                         PAPVDPKIEKELKKAVQKTAATFAPRASTA
Sbjct: 61  AAEASAVGESKEGEVASGGGSSAESSAEKKPAPVDPKIEKELKKAVQKTAATFAPRASTA 120

Query: 121 TKNPAVPGTALYTIFEVQGYASMLLGGALSFNLVFPSNEPDIWRLMGMWSIWMFTIPSLR 180
           TKNPAVPGTALYTIFEVQGYASMLLGGALSFNLVFPSNEPDIWRLMGMWSIWMFTIPSLR
Sbjct: 121 TKNPAVPGTALYTIFEVQGYASMLLGGALSFNLVFPSNEPDIWRLMGMWSIWMFTIPSLR 180

Query: 181 ARDCSSKEKEALNYLFLLVPLINVIIPFFVKSFAVVWSADTVAFFVMYAWKLGWLQRSE 239
           ARDCSSKEKEALNYLFLLVPLINVIIPFFVKSFAVVWSADTVAFFVMYAWKLGWLQRSE
Sbjct: 181 ARDCSSKEKEALNYLFLLVPLINVIIPFFVKSFAVVWSADTVAFFVMYAWKLGWLQRSE 239



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,042,088
Number of extensions: 199246
Number of successful extensions: 551
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 154 (63.9 bits)