Os05g0404400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0404400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.4 | 0.313 | 13.7 | 0.221 | 0.247 | -0.683 | 0.0858 | 0.659 | -0.476 | 1.44 | 90.62 | 261 | -- | -- |
| 44.99 | 0.312 | 13.7 | 0.251 | 0.271 | -0.681 | 0.277 | -- | -0.472 | 2 | 90.38 | 265 | -- | -- |
| 44.42 | 0.31 | 13.7 | 0.217 | 0.245 | -0.677 | -- | 0.707 | -0.475 | 1.3 | 90.68 | 261 | -- | -- |
| 45.26 | 0.313 | 13.7 | 0.234 | 0.247 | -0.642 | -- | -- | -0.471 | 1.41 | 90.52 | 265 | -- | -- |
| 47.52 | 0.321 | 13.7 | 0.205 | -- | -0.603 | -- | 0.758 | -0.458 | -- | 91.31 | 285 | -- | -- |
| 52.29 | 0.339 | 13.7 | 0.168 | 0.242 | -- | -0.135 | -- | -0.369 | 20.8 | -- | -- | -- | -- |
| 52.35 | 0.339 | 13.7 | 0.173 | 0.242 | -- | -- | -- | -0.37 | 20.9 | -- | -- | -- | -- |
| 47.83 | 0.322 | 13.7 | 0.226 | -- | -0.83 | -- | -- | -0.436 | -- | 93.58 | 282 | -- | -- |
| 46.71 | 0.318 | 13.7 | -- | 0.243 | -0.613 | -- | -- | -0.488 | 1.2 | 90.74 | 262 | -- | -- |
| 55.69 | 0.349 | 13.7 | 0.173 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 53.13 | 0.341 | 13.7 | -- | 0.241 | -- | -- | -- | -0.389 | 21 | -- | -- | -- | -- |
| 49.01 | 0.326 | 13.7 | -- | -- | -0.899 | -- | -- | -0.458 | -- | 93.82 | 273 | -- | -- |
| 56.47 | 0.351 | 13.7 | -- | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.60 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 2 | 36.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 3 | 36.61 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 5 | 36.73 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 9 | 36.79 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 10 | 36.79 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 16 | 36.89 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 25 | 37.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 26 | 37.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 40 | 37.44 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 41 | 37.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 42 | 37.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 51 | 37.54 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 52 | 37.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 53 | 37.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 55 | 37.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 56 | 37.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 59 | 37.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 64 | 37.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 74 | 37.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 75 | 37.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 79 | 37.72 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 81 | 37.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 86 | 37.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 95 | 37.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 97 | 37.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 98 | 37.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 100 | 37.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 101 | 37.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 103 | 37.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 105 | 37.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 132 | 38.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 147 | 38.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 149 | 38.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 161 | 38.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 164 | 38.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 189 | 38.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 224 | 38.59 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 253 | 38.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 287 | 38.84 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 294 | 38.88 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 331 | 39.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 340 | 39.09 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 346 | 39.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 347 | 39.12 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 390 | 39.36 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 400 | 39.42 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 402 | 39.43 | humidity | 70.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 405 | 39.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 414 | 39.47 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 430 | 39.57 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 445 | 39.63 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 451 | 39.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 453 | 39.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 474 | 39.74 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 475 | 39.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 476 | 39.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 477 | 39.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 486 | 39.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 487 | 39.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 15 |
| 488 | 39.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 15 |
| 489 | 39.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 509 | 39.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 511 | 39.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 525 | 39.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 526 | 39.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 527 | 39.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 528 | 39.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 531 | 39.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 537 | 39.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 538 | 39.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 540 | 39.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 556 | 39.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 582 | 39.92 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 584 | 39.92 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 585 | 39.92 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 608 | 39.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 624 | 40.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 626 | 40.00 | humidity | 90.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 632 | 40.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 675 | 40.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 9 |
| 676 | 40.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 677 | 40.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 690 | 40.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 15 |
| 700 | 40.18 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 712 | 40.19 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 733 | 40.24 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 745 | 40.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 784 | 40.30 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 790 | 40.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 798 | 40.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 801 | 40.34 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 802 | 40.34 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 803 | 40.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 825 | 40.38 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 826 | 40.38 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 828 | 40.38 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 829 | 40.38 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 831 | 40.38 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 832 | 40.38 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 833 | 40.38 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 18 |
| 836 | 40.39 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 840 | 40.39 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 863 | 40.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 929 | 40.52 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 956 | 40.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 964 | 40.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 983 | 40.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 9 |