BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0401300 Os05g0401300|AK060678
         (253 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0401300  Twin-arginine translocation pathway signal dom...   380   e-106

>Os05g0401300 Twin-arginine translocation pathway signal domain containing
           protein
          Length = 253

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/253 (77%), Positives = 197/253 (77%)

Query: 1   MAPAVLLRLXXXXXXXXXXXXXXXXXXXXXXXXXXDFAIHTXXXXXXXXXXXXXXXXXXX 60
           MAPAVLLRL                          DFAIHT                   
Sbjct: 1   MAPAVLLRLAPSPPYPQNPPPRRRSPASACGASRRDFAIHTAIASASAAVAVSVRPATAA 60

Query: 61  XXXXXXXXXXXSQNKKGSPLLGGIANTKSWSQYYGSGFSIRVPPSFDDILEPEEFNVGMT 120
                      SQNKKGSPLLGGIANTKSWSQYYGSGFSIRVPPSFDDILEPEEFNVGMT
Sbjct: 61  AADEEAPPGEPSQNKKGSPLLGGIANTKSWSQYYGSGFSIRVPPSFDDILEPEEFNVGMT 120

Query: 121 YYGDKAKPRTYAARFASPDRSELVSVVIKPSNQLKITFLEAKDITDLGTLKEASKIFVPG 180
           YYGDKAKPRTYAARFASPDRSELVSVVIKPSNQLKITFLEAKDITDLGTLKEASKIFVPG
Sbjct: 121 YYGDKAKPRTYAARFASPDRSELVSVVIKPSNQLKITFLEAKDITDLGTLKEASKIFVPG 180

Query: 181 GAKLYSARTIKVKDEDDIRTYYFYEFGVDKEHVAVMATVNSGKTYIAGATAPETKWDDDG 240
           GAKLYSARTIKVKDEDDIRTYYFYEFGVDKEHVAVMATVNSGKTYIAGATAPETKWDDDG
Sbjct: 181 GAKLYSARTIKVKDEDDIRTYYFYEFGVDKEHVAVMATVNSGKTYIAGATAPETKWDDDG 240

Query: 241 VKLRSAAVSLSVL 253
           VKLRSAAVSLSVL
Sbjct: 241 VKLRSAAVSLSVL 253



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,891,133
Number of extensions: 257237
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)