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Os05g0401300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Twin-arginine translocation pathway signal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.26 (0.0262) R2 : 0.666
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.02 (0.0678) R2dC : 0.654 R2C : 0.654
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.191 (0.0551) R2dN8 : 0.0114 R2N8 : 0.0117
σ : 0.494
deviance : 111.52
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_____
C
peak time of C : 16.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.95 0.472 8.19 0.454 2.03 0.275 0.222 -1.81 -0.0436 16.7 18.9 1903 -- --
104.18 0.475 8.22 0.392 2 0.783 0.337 -- -0.0427 16.7 18.4 3114 -- --
101.07 0.468 8.19 0.453 2.03 0.276 -- -1.85 -0.0432 16.7 18.9 1867 -- --
103.29 0.473 8.23 0.395 2.02 0.913 -- -- -0.0767 16.7 16.7 5920 -- --
314.16 0.826 8.16 0.482 -- 0.285 -- -1.84 -0.0606 -- 20.6 1210 -- --
111.37 0.495 8.26 0.00356 2.02 -- 0.244 -- -0.191 16.7 -- -- -- --
111.52 0.495 8.26 0.0049 2.02 -- -- -- -0.19 16.7 -- -- -- --
311.14 0.822 8.22 0.262 -- 1.19 -- -- -0.0701 -- 17.8 2665 -- --
105.73 0.479 8.24 -- 2.01 0.579 -- -- -0.133 16.6 16.9 4308 -- --
328.82 0.847 8.24 -0.0721 -- -- -- -- -0.243 -- -- -- -- --
111.52 0.494 8.26 -- 2.02 -- -- -- -0.191 16.7 -- -- -- --
313.26 0.824 8.22 -- -- 1.1 -- -- -0.135 -- 17.7 2670 -- --
328.95 0.847 8.24 -- -- -- -- -- -0.235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.88 atmosphere 1000.0 30 > th dose independent rect. 5 18
5 95.05 temperature 20.0 90 > th dose independent rect. 17 15
9 95.86 atmosphere 995.0 10 > th dose dependent rect. 5 18
13 96.12 radiation 40.0 270 < th dose independent rect. 2 13
16 96.22 radiation 10.0 270 < th dose independent rect. 14 17
20 96.35 temperature 20.0 30 > th dose independent rect. 5 18
22 96.38 radiation 40.0 270 < th dose dependent rect. 3 12
26 96.51 radiation 20.0 270 < th dose dependent rect. 14 18
32 96.65 radiation 40.0 270 < th dose independent rect. 1 22
34 96.66 radiation 40.0 270 < th dose dependent rect. 11 21
40 96.70 humidity 60.0 270 > th dose dependent rect. 2 19
43 96.74 radiation 40.0 90 < th dose independent rect. 4 19
44 96.74 humidity 60.0 270 > th dose dependent rect. 3 17
56 96.90 radiation 40.0 270 < th dose independent rect. 11 11
57 96.91 radiation 40.0 270 < th dose independent rect. 2 20
66 96.98 humidity 60.0 90 > th dose dependent rect. 4 19
74 97.06 radiation 40.0 270 < th dose dependent rect. 2 19
102 97.31 temperature 20.0 270 > th dose independent rect. 11 21
110 97.40 temperature 30.0 30 < th dose independent rect. 5 18
119 97.44 radiation 40.0 270 < th dose dependent rect. 1 22
120 97.45 humidity 70.0 90 > th dose independent rect. 4 19
123 97.46 temperature 10.0 90 > th dose dependent rect. 19 13
132 97.56 temperature 30.0 270 < th dose independent rect. 17 14
135 97.58 humidity 60.0 270 > th dose independent rect. 17 14
147 97.61 radiation 10.0 4320 < th dose dependent rect. 24 5
158 97.65 wind 1.0 270 > th dose independent rect. 7 10
161 97.66 radiation 10.0 270 < th dose independent rect. 3 18
163 97.68 humidity 70.0 270 > th dose independent rect. 15 16
169 97.72 temperature 20.0 30 > th dose independent rect. 5 3
173 97.72 radiation 20.0 270 < th dose dependent rect. 1 22
176 97.74 temperature 25.0 270 < th dose independent rect. 2 9
180 97.74 temperature 10.0 270 > th dose dependent rect. 7 19
182 97.76 wind 1.0 90 > th dose independent rect. 8 21
197 97.84 temperature 25.0 270 < th dose independent rect. 2 11
207 97.89 temperature 25.0 270 < th dose independent rect. 2 13
213 97.93 wind 1.0 90 > th dose independent rect. 23 6
224 97.97 radiation 40.0 270 < th dose independent rect. 10 22
225 97.97 humidity 60.0 90 > th dose dependent rect. 5 16
236 98.02 radiation 30.0 270 < th dose dependent rect. 3 8
246 98.05 radiation 10.0 270 < th dose independent rect. 1 22
254 98.07 temperature 30.0 14400 < th dose dependent rect. 7 2
255 98.08 wind 9.0 270 < th dose independent rect. 7 10
259 98.09 humidity 90.0 270 > th dose independent rect. 3 17
262 98.09 temperature 10.0 14400 > th dose dependent rect. 7 2
266 98.11 temperature 10.0 270 > th dose dependent rect. 6 21
269 98.12 atmosphere 1015.0 10 < th dose dependent rect. 9 20
278 98.16 temperature 25.0 270 < th dose independent rect. 2 16
293 98.18 humidity 80.0 270 > th dose dependent rect. 3 7
305 98.24 temperature 15.0 10 > th dose dependent rect. 20 13
307 98.25 atmosphere 995.0 270 > th dose independent rect. 17 14
329 98.29 radiation 20.0 270 < th dose dependent rect. 3 6
333 98.31 radiation 1.0 4320 < th dose independent rect. 24 5
349 98.34 radiation 40.0 10 < th dose independent rect. 5 18
354 98.35 temperature 10.0 30 > th dose dependent rect. 5 3
362 98.37 humidity 80.0 270 > th dose dependent rect. 3 14
371 98.39 humidity 90.0 720 > th dose dependent rect. 7 11
416 98.48 temperature 30.0 30 < th dose dependent rect. 23 6
427 98.49 temperature 15.0 10 > th dose dependent rect. 18 15
435 98.51 radiation 20.0 90 < th dose independent rect. 5 18
446 98.53 radiation 40.0 90 < th dose dependent rect. 5 18
470 98.58 temperature 20.0 720 > th dose independent rect. 19 4
475 98.59 radiation 20.0 270 < th dose independent rect. 2 14
487 98.61 atmosphere 1000.0 10 > th dose independent rect. 5 11
499 98.63 precipitation 0.1 270 < th dose independent rect. 7 10
503 98.63 temperature 15.0 270 > th dose independent rect. 1 22
507 98.63 precipitation 0.1 270 < th dose dependent rect. 7 10
516 98.65 radiation 40.0 14400 < th dose dependent rect. 24 5
520 98.66 wind 7.0 270 < th dose independent rect. 6 22
526 98.68 humidity 90.0 270 > th dose independent rect. 3 7
547 98.71 temperature 20.0 720 > th dose independent rect. 11 12
557 98.72 temperature 30.0 270 < th dose dependent rect. 3 16
595 98.79 humidity 70.0 270 > th dose independent rect. 2 18
597 98.79 temperature 30.0 270 < th dose dependent rect. 21 6
669 98.88 temperature 25.0 14400 < th dose dependent sin 3 NA
673 98.88 temperature 30.0 270 < th dose dependent rect. 23 2
696 98.90 humidity 50.0 14400 > th dose independent rect. 5 4
709 98.92 humidity 80.0 90 > th dose independent rect. 5 6
719 98.93 temperature 10.0 270 > th dose independent rect. 7 10
720 98.93 atmosphere 1015.0 270 < th dose independent rect. 7 10
740 98.95 wind 5.0 30 < th dose independent rect. 23 6
743 98.95 wind 9.0 10 < th dose independent rect. 9 20
831 99.02 temperature 10.0 14400 > th dose dependent sin 4 NA
833 99.02 temperature 15.0 720 > th dose dependent rect. 20 2
856 99.04 wind 7.0 270 < th dose independent rect. 7 20
867 99.05 radiation 10.0 270 < th dose independent rect. 3 6
885 99.06 temperature 10.0 720 > th dose dependent rect. 19 4
895 99.07 radiation 20.0 270 < th dose independent rect. 2 8
947 99.10 radiation 40.0 30 < th dose independent rect. 5 3
956 99.10 temperature 10.0 90 > th dose dependent rect. 8 9
978 99.11 temperature 25.0 14400 < th dose dependent rect. 17 18