BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0396900 Os05g0396900|AK069649
         (601 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0396900  Conserved hypothetical protein                     1198   0.0  

>Os05g0396900 Conserved hypothetical protein
          Length = 601

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/601 (97%), Positives = 585/601 (97%)

Query: 1   MSAHHPPHGIAAGDARKAHHLGGDPKNLSWCGVGVGDHHFLPRKLVGGGGPSAAKLALVS 60
           MSAHHPPHGIAAGDARKAHHLGGDPKNLSWCGVGVGDHHFLPRKLVGGGGPSAAKLALVS
Sbjct: 1   MSAHHPPHGIAAGDARKAHHLGGDPKNLSWCGVGVGDHHFLPRKLVGGGGPSAAKLALVS 60

Query: 61  FLAVILVLAVDLSLTGAGANRRLRLQYLHYIXXXXXXXXXXXXXXXXEEAKNNELPWLSV 120
           FLAVILVLAVDLSLTGAGANRRLRLQYLHYI                EEAKNNELPWLSV
Sbjct: 61  FLAVILVLAVDLSLTGAGANRRLRLQYLHYIGDGGGGGGGGGVGGGGEEAKNNELPWLSV 120

Query: 121 PDPSNFTEELIDRWLTPGGTPCRDSRTANISIPVLDDAAAAGEVTTLGSAEIHEFTFWAL 180
           PDPSNFTEELIDRWLTPGGTPCRDSRTANISIPVLDDAAAAGEVTTLGSAEIHEFTFWAL
Sbjct: 121 PDPSNFTEELIDRWLTPGGTPCRDSRTANISIPVLDDAAAAGEVTTLGSAEIHEFTFWAL 180

Query: 181 DDAGQRRCLGGDFFEIDLAGDEWKSRPPVVDHGDGSYSFRLQVAPRFAEGDFRLTIILLF 240
           DDAGQRRCLGGDFFEIDLAGDEWKSRPPVVDHGDGSYSFRLQVAPRFAEGDFRLTIILLF
Sbjct: 181 DDAGQRRCLGGDFFEIDLAGDEWKSRPPVVDHGDGSYSFRLQVAPRFAEGDFRLTIILLF 240

Query: 241 RSFEGLKFSSLRFKYHAEMRRIPLLFGPSNSTRFLPALETCRAADFARDVWSGRWTRLAK 300
           RSFEGLKFSSLRFKYHAEMRRIPLLFGPSNSTRFLPALETCRAADFARDVWSGRWTRLAK
Sbjct: 241 RSFEGLKFSSLRFKYHAEMRRIPLLFGPSNSTRFLPALETCRAADFARDVWSGRWTRLAK 300

Query: 301 NDSCEEVDDAGRYRCLEPQHPCEAPWCAGPLGALESNGWVYSAHCSFSLFTADAAWRCLD 360
           NDSCEEVDDAGRYRCLEPQHPCEAPWCAGPLGALESNGWVYSAHCSFSLFTADAAWRCLD
Sbjct: 301 NDSCEEVDDAGRYRCLEPQHPCEAPWCAGPLGALESNGWVYSAHCSFSLFTADAAWRCLD 360

Query: 361 GKWLFFWGDSNHVDTIRNLLTFVLGVTNTSAVTRRFDAAFTNPSGGPGTVRITSIFNGHW 420
           GKWLFFWGDSNHVDTIRNLLTFVLGVTNTSAVTRRFDAAFTNPSGGPGTVRITSIFNGHW
Sbjct: 361 GKWLFFWGDSNHVDTIRNLLTFVLGVTNTSAVTRRFDAAFTNPSGGPGTVRITSIFNGHW 420

Query: 421 NMSMNYLGLHSLRNKGFQRLVRSYFLAEDRAPDIVILNSGLHDGCYWTSVRAYVQAAEYA 480
           NMSMNYLGLHSLRNKGFQRLVRSYFLAEDRAPDIVILNSGLHDGCYWTSVRAYVQAAEYA
Sbjct: 421 NMSMNYLGLHSLRNKGFQRLVRSYFLAEDRAPDIVILNSGLHDGCYWTSVRAYVQAAEYA 480

Query: 481 AQFWAGVMAEVRSRGHAVPRMFYRTTIATGGYARDLAFNPSKMEAFNGVLVEKLRRHGVL 540
           AQFWAGVMAEVRSRGHAVPRMFYRTTIATGGYARDLAFNPSKMEAFNGVLVEKLRRHGVL
Sbjct: 481 AQFWAGVMAEVRSRGHAVPRMFYRTTIATGGYARDLAFNPSKMEAFNGVLVEKLRRHGVL 540

Query: 541 TGGLIDNFDMTFPWHYDNRCNDGVHYGRAPAKLLWRDGKVGHQYFVDLMLGHVLLNAICN 600
           TGGLIDNFDMTFPWHYDNRCNDGVHYGRAPAKLLWRDGKVGHQYFVDLMLGHVLLNAICN
Sbjct: 541 TGGLIDNFDMTFPWHYDNRCNDGVHYGRAPAKLLWRDGKVGHQYFVDLMLGHVLLNAICN 600

Query: 601 G 601
           G
Sbjct: 601 G 601



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,762,745
Number of extensions: 1103078
Number of successful extensions: 2028
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2027
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 494
Effective length of database: 11,448,903
Effective search space: 5655758082
Effective search space used: 5655758082
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)