FiT-DB / Search/ Help/ Sample detail

Os05g0396900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.91 (0.0597) R2 : 0.593
β1 : -3.38 (0.22) R2dD : 0.256 R2D : 0.211
β2 : 1.33 (0.138) R2dC : 0.085 R2C : 0.034
β3 : -1.13 (0.195) R2dE : 0.035 R2E : 0.0508
β4 : -2.43 (0.553) R2dD*C : 0.0174 R2D*C : -0.0295
β5 : -9.57 (0.702) R2dD*E : 0.193 R2D*E : 0.0829
γ1 : -0.902 (0.123) R2dN8 : 0.0693 R2N8 : -0.0348
σ : 1.05
deviance : 497.89
__
_____
C
peak time of C : 9.27
E
wheather : radiation
threshold : 19.96
memory length : 5550
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.89
open length of G : 0.986

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
497.89 1.05 7.91 -3.38 1.33 -1.13 -2.43 -9.57 -0.902 9.27 19.96 5550 6.89 0.986
653.1 1.19 7.84 -3.35 1.44 -1.14 -1.92 -- -0.831 9.16 20.11 5526 6.85 0.891
516.13 1.06 7.91 -3.44 1.36 -1.11 -- -9.43 -0.918 9.13 19.93 5559 6.88 0.933
658.43 1.2 7.84 -3.5 1.41 -1.26 -- -- -0.724 8.88 20.24 5498 6.98 0.999
619.21 1.16 7.91 -3.3 -- -1.4 -- -9.49 -0.844 -- 19.88 5554 6.88 0.876
725.82 1.26 7.64 -3.61 1.52 -- -1.59 -- -0.675 8.54 -- -- -- --
732.84 1.27 7.64 -3.67 1.55 -- -- -- -0.679 8.19 -- -- -- --
726.87 1.26 7.8 -3.71 -- -2.46 -- -- -0.84 -- 21.89 5509 6.97 1.67
951.19 1.44 7.61 -- 1.63 -2.5 -- -- -0.537 8.37 26.8 8651 7.18 1.26
864.4 1.37 7.68 -3.66 -- -- -- -- -0.661 -- -- -- -- --
1087.77 1.54 7.55 -- 1.53 -- -- -- -0.27 8.36 -- -- -- --
1023.28 1.49 7.58 -- -- -3.2 -- -- 0.12 -- 27.51 5534 6.87 1.58
1217.31 1.63 7.59 -- -- -- -- -- -0.255 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 496.61 humidity 70 14400 < th dose independent rect. 18 13
2 497.13 humidity 70 14400 > th dose independent rect. 19 13
3 497.60 humidity 70 14400 < th dose independent rect. 18 2
4 497.75 humidity 70 14400 < th dose independent rect. 18 4
13 498.09 humidity 70 14400 > th dose independent rect. 19 1
17 502.78 humidity 70 14400 > th dose independent rect. 19 4
39 506.69 radiation 20 14400 > th dose dependent rect. 16 15
42 508.01 radiation 40 4320 < th dose dependent rect. 18 2
45 513.02 radiation 20 14400 > th dose dependent rect. 16 1
60 514.13 radiation 30 4320 < th dose dependent rect. 18 5
78 516.74 radiation 30 14400 < th dose independent rect. 15 17
83 517.74 radiation 20 4320 < th dose dependent rect. 18 8
100 519.31 radiation 30 14400 < th dose independent rect. 15 5
101 519.33 radiation 30 14400 > th dose dependent rect. 15 17
103 519.36 radiation 30 14400 < th dose independent rect. 15 8
107 519.45 radiation 30 14400 < th dose independent rect. 15 11
178 526.50 humidity 90 43200 > th dose independent rect. 9 1
191 528.00 radiation 40 4320 > th dose dependent rect. 13 20
195 528.11 radiation 20 4320 < th dose independent rect. 7 1
221 529.21 wind 5 43200 < th dose independent rect. 11 1
238 529.69 radiation 40 4320 > th dose dependent rect. 13 3
256 529.95 humidity 80 43200 > th dose dependent rect. 10 1
258 530.06 wind 5 43200 > th dose independent rect. 11 1
266 530.90 humidity 80 14400 < th dose dependent rect. 18 2
270 531.69 humidity 90 43200 < th dose independent rect. 9 2
271 531.83 humidity 70 14400 < th dose dependent rect. 16 15
277 532.04 humidity 70 14400 < th dose dependent rect. 16 6
299 532.18 wind 3 43200 > th dose dependent rect. 11 1
301 532.30 atmosphere 1005 43200 < th dose independent rect. 18 1
319 532.79 radiation 10 14400 < th dose independent rect. 14 6
332 533.14 atmosphere 1005 43200 > th dose independent rect. 18 1
337 533.32 radiation 30 14400 < th dose independent sin 12 NA
420 535.09 humidity 80 43200 > th dose independent rect. 12 2
434 535.27 radiation 10 14400 < th dose independent sin 14 NA
441 535.61 atmosphere 1005 43200 > th dose independent rect. 16 1
443 535.69 humidity 90 43200 > th dose independent rect. 21 1
454 536.03 atmosphere 1005 43200 < th dose independent rect. 16 1
461 536.37 atmosphere 1005 43200 > th dose independent rect. 16 3
474 536.93 humidity 90 43200 < th dose independent rect. 20 2
476 537.18 radiation 40 4320 > th dose dependent sin 13 NA
487 537.48 humidity 90 43200 < th dose independent rect. 18 17
493 537.64 humidity 90 43200 > th dose dependent rect. 20 2
515 538.08 radiation 30 14400 > th dose dependent rect. 7 2
531 538.19 humidity 70 14400 < th dose independent sin 13 NA
539 538.31 radiation 1 1440 < th dose dependent rect. 15 15
548 538.65 wind 9 43200 < th dose dependent rect. 11 1
560 539.00 humidity 80 43200 < th dose independent rect. 13 1
562 539.01 radiation 1 1440 > th dose dependent rect. 18 12
566 539.12 wind 5 43200 > th dose dependent rect. 10 4
576 539.35 radiation 40 14400 < th dose independent rect. 8 1
594 539.67 radiation 40 4320 > th dose independent rect. 15 18
612 539.80 wind 3 43200 < th dose independent rect. 3 1
621 539.83 radiation 1 1440 < th dose dependent rect. 13 17
639 539.95 radiation 1 1440 < th dose dependent rect. 10 20
653 540.10 radiation 1 1440 < th dose dependent sin 13 NA
677 540.33 humidity 90 43200 < th dose independent rect. 8 22
721 540.83 wind 3 43200 > th dose independent rect. 3 1
750 541.05 humidity 90 43200 > th dose independent rect. 18 16
778 541.22 humidity 90 43200 < th dose independent rect. 18 8
790 541.31 humidity 90 43200 < th dose independent sin 15 NA
796 541.38 humidity 90 43200 < th dose independent rect. 1 11
804 541.46 humidity 90 43200 < th dose independent rect. 24 23
819 541.66 wind 3 43200 > th dose dependent rect. 5 1
832 541.79 humidity 90 43200 < th dose independent no NA NA
860 541.95 radiation 30 14400 < th dose independent rect. 22 11
869 542.00 humidity 90 43200 < th dose independent sin 6 NA
912 542.41 humidity 90 43200 > th dose independent rect. 2 8
913 542.41 humidity 90 43200 < th dose independent rect. 15 12
937 542.52 humidity 90 43200 < th dose independent rect. 2 9
944 542.55 humidity 90 43200 < th dose independent rect. 5 23
959 542.69 radiation 30 14400 > th dose independent rect. 16 16