BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0396700 Os05g0396700|AK062313
         (202 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0396700  Conserved hypothetical protein                      142   2e-34

>Os05g0396700 Conserved hypothetical protein
          Length = 202

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 82/152 (53%)

Query: 51  LHSVGRSARDVQLNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSKITSGSEXXXXX 110
           LHSVGRSARDVQLNG                              TSSKITSGSE     
Sbjct: 51  LHSVGRSARDVQLNGAALLARSPRAASLLALPPHAASLLARPPPPTSSKITSGSELPLPS 110

Query: 111 XXXXXXXXXXXXXXXADHPKKEGTSSSPLLPPHCXXXXXXXXXXXXXXXXXXXXVGNAIN 170
                          ADHPKKEGTSSSPLLPPHC                    VGNAIN
Sbjct: 111 PGRLKKPKLLPPPRLADHPKKEGTSSSPLLPPHCPRREGPRPPGGLRRGPGGPRVGNAIN 170

Query: 171 RFKYSIRFLIEQVIGARILLICIMKLLIFPLV 202
           RFKYSIRFLIEQVIGARILLICIMKLLIFPLV
Sbjct: 171 RFKYSIRFLIEQVIGARILLICIMKLLIFPLV 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,526,692
Number of extensions: 41720
Number of successful extensions: 69
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)