BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0394900 Os05g0394900|AK058958
         (373 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0394900  Conserved hypothetical protein                      547   e-156

>Os05g0394900 Conserved hypothetical protein
          Length = 373

 Score =  547 bits (1409), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 287/373 (76%), Positives = 287/373 (76%)

Query: 1   MRYTLQNRFXXXXXXXXXXXXXXXXXXXLAEKMLNEQELILDATKERSKMLEQQVRENAK 60
           MRYTLQNRF                   LAEKMLNEQELILDATKERSKMLEQQVRENAK
Sbjct: 1   MRYTLQNRFAEAEVETVAAEKKKVERETLAEKMLNEQELILDATKERSKMLEQQVRENAK 60

Query: 61  LRELLMDRGQIVDALQGEMLGIFDKISQLQLRVDKQLPEPLLXXXXXXXXXADNIAQLQC 120
           LRELLMDRGQIVDALQGEMLGIFDKISQLQLRVDKQLPEPLL         ADNIAQLQC
Sbjct: 61  LRELLMDRGQIVDALQGEMLGIFDKISQLQLRVDKQLPEPLLSSMSSSVNSADNIAQLQC 120

Query: 121 RVDDPQHSVDDSLQLASPRLSSSFKSTDSTAQAHCRVDEPQISVDESLLPVDECEQLKLI 180
           RVDDPQHSVDDSLQLASPRLSSSFKSTDSTAQAHCRVDEPQISVDESLLPVDECEQLKLI
Sbjct: 121 RVDDPQHSVDDSLQLASPRLSSSFKSTDSTAQAHCRVDEPQISVDESLLPVDECEQLKLI 180

Query: 181 LPRLSSSVMSAQSQYRVDEPLLPVDEVXXXXXXXXXXXXXXGDNIAQLLGVLDVHLPVDE 240
           LPRLSSSVMSAQSQYRVDEPLLPVDEV              GDNIAQLLGVLDVHLPVDE
Sbjct: 181 LPRLSSSVMSAQSQYRVDEPLLPVDEVLQLASSSLSSSLKSGDNIAQLLGVLDVHLPVDE 240

Query: 241 XXXXXXXXXXXXXXXXXXIAQFQQKADADEMLQSSSLASSEKPATFKNWSSASDTITQFQ 300
                             IAQFQQKADADEMLQSSSLASSEKPATFKNWSSASDTITQFQ
Sbjct: 241 LLQLPSLILSSSVKSSDSIAQFQQKADADEMLQSSSLASSEKPATFKNWSSASDTITQFQ 300

Query: 301 QRANADEXXXXXXXXXXXXEKPATFKSTWSSAAESNSVFSGDEEIDDASFHXXXXXXXXX 360
           QRANADE            EKPATFKSTWSSAAESNSVFSGDEEIDDASFH         
Sbjct: 301 QRANADESLPLPSSSLASSEKPATFKSTWSSAAESNSVFSGDEEIDDASFHDSIDLDDSW 360

Query: 361 XXXXXEAIYMCAN 373
                EAIYMCAN
Sbjct: 361 DLVDDEAIYMCAN 373



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.127    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,442,164
Number of extensions: 271545
Number of successful extensions: 583
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 271
Effective length of database: 11,709,973
Effective search space: 3173402683
Effective search space used: 3173402683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)