BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0390100 Os05g0390100|AK120123
         (803 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0390100  Dynamin family protein                             1475   0.0  

>Os05g0390100 Dynamin family protein
          Length = 803

 Score = 1475 bits (3819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 732/803 (91%), Positives = 732/803 (91%)

Query: 1   MFAALSLKASVGDRAYLLVAERXXXXXXXXXXXXXXXXXXIPAIVARSMMMKSNSDSIYL 60
           MFAALSLKASVGDRAYLLVAER                  IPAIVARSMMMKSNSDSIYL
Sbjct: 1   MFAALSLKASVGDRAYLLVAERVDVASAVGASGVVLADDGIPAIVARSMMMKSNSDSIYL 60

Query: 61  PLVXXXXXXXXXXXXXXXXEGADFLIIDTGSDDAINVMNGVSGTQHVKIPIFSTLSDSQS 120
           PLV                EGADFLIIDTGSDDAINVMNGVSGTQHVKIPIFSTLSDSQS
Sbjct: 61  PLVARTIRSADTARSATSSEGADFLIIDTGSDDAINVMNGVSGTQHVKIPIFSTLSDSQS 120

Query: 121 EGSYSDNTSRLLQSGASGIVMSLAGIQVLADDIIERDFSKVDTAESVLQANYSSASTLEE 180
           EGSYSDNTSRLLQSGASGIVMSLAGIQVLADDIIERDFSKVDTAESVLQANYSSASTLEE
Sbjct: 121 EGSYSDNTSRLLQSGASGIVMSLAGIQVLADDIIERDFSKVDTAESVLQANYSSASTLEE 180

Query: 181 ADNVMVLTREKAKVAGFTKLDEKVMQLISIEKPILSEAVAVIRKAAPMMEEVELLVDAAS 240
           ADNVMVLTREKAKVAGFTKLDEKVMQLISIEKPILSEAVAVIRKAAPMMEEVELLVDAAS
Sbjct: 181 ADNVMVLTREKAKVAGFTKLDEKVMQLISIEKPILSEAVAVIRKAAPMMEEVELLVDAAS 240

Query: 241 RLSEPFLLVTVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCER 300
           RLSEPFLLVTVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCER
Sbjct: 241 RLSEPFLLVTVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCER 300

Query: 301 HPDGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDS 360
           HPDGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDS
Sbjct: 301 HPDGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDS 360

Query: 361 EVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRS 420
           EVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRS
Sbjct: 361 EVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRS 420

Query: 421 ALEAKLLYSKNDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLET 480
           ALEAKLLYSKNDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLET
Sbjct: 421 ALEAKLLYSKNDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLET 480

Query: 481 PIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIA 540
           PIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIA
Sbjct: 481 PIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIA 540

Query: 541 RAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEY 600
           RAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEY
Sbjct: 541 RAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEY 600

Query: 601 STWLSSTNVREANIYVDCFHERWGALVAQEQRIXXXXXXXXXXXXXXXXKALDGFSASAA 660
           STWLSSTNVREANIYVDCFHERWGALVAQEQRI                KALDGFSASAA
Sbjct: 601 STWLSSTNVREANIYVDCFHERWGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSASAA 660

Query: 661 AKVFEEEIREVAWGTFXXXXXXXXXXXXXXXXXXXXXEDLLALALCSAGGFFAISNFPTR 720
           AKVFEEEIREVAWGTF                     EDLLALALCSAGGFFAISNFPTR
Sbjct: 661 AKVFEEEIREVAWGTFGGLGVAGLSASLLTSVLTSTLEDLLALALCSAGGFFAISNFPTR 720

Query: 721 RKLAVEKIGKAAEKLSSKVDEAIQQDISRSANQLVHFVETVSKPYQDACQQKIDWLQGVQ 780
           RKLAVEKIGKAAEKLSSKVDEAIQQDISRSANQLVHFVETVSKPYQDACQQKIDWLQGVQ
Sbjct: 721 RKLAVEKIGKAAEKLSSKVDEAIQQDISRSANQLVHFVETVSKPYQDACQQKIDWLQGVQ 780

Query: 781 GELSTVERKLQTLKVEIQNLHES 803
           GELSTVERKLQTLKVEIQNLHES
Sbjct: 781 GELSTVERKLQTLKVEIQNLHES 803



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,413,651
Number of extensions: 785122
Number of successful extensions: 2275
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2271
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 694
Effective length of database: 11,344,475
Effective search space: 7873065650
Effective search space used: 7873065650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)