BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0369900 Os05g0369900|AK064110
(373 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0369900 Conserved hypothetical protein 674 0.0
Os05g0369300 Exo70 exocyst complex subunit family protein 231 7e-61
Os05g0369500 Exo70 exocyst complex subunit family protein 221 7e-58
Os05g0368900 101 9e-22
Os08g0232700 Exo70 exocyst complex subunit family protein 69 5e-12
>Os05g0369900 Conserved hypothetical protein
Length = 373
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/373 (89%), Positives = 335/373 (89%)
Query: 1 MKLEPQLAITMELGRSSDPNISLQSRRHSYLQEIRSLAVDSAGGWXXXXXXXXXXXXXXX 60
MKLEPQLAITMELGRSSDPNISLQSRRHSYLQEIRSLAVDSAGGW
Sbjct: 1 MKLEPQLAITMELGRSSDPNISLQSRRHSYLQEIRSLAVDSAGGWSPSSSSRSARSSSYY 60
Query: 61 XXXXXXXXXXXXAPYSISSSRRLARLEDKSPRDIARRMVRDGFMGKLIGEFGRAPRPALE 120
APYSISSSRRLARLEDKSPRDIARRMVRDGFMGKLIGEFGRAPRPALE
Sbjct: 61 SSSKSSSSRHRYAPYSISSSRRLARLEDKSPRDIARRMVRDGFMGKLIGEFGRAPRPALE 120
Query: 121 RWFSELDVGWVLRSALEKEKSELALDKLYDLAVQRWTRGFTVMAEALSATQRHLQEEGRS 180
RWFSELDVGWVLRSALEKEKSELALDKLYDLAVQRWTRGFTVMAEALSATQRHLQEEGRS
Sbjct: 121 RWFSELDVGWVLRSALEKEKSELALDKLYDLAVQRWTRGFTVMAEALSATQRHLQEEGRS 180
Query: 181 TAQXXXXXXXXXXXFVEATVCKMLAFANSLVAVADKTWNPMNKLSGLMNVRSCISHASEI 240
TAQ FVEATVCKMLAFANSLVAVADKTWNPMNKLSGLMNVRSCISHASEI
Sbjct: 181 TAQVDRDDDLRLVRFVEATVCKMLAFANSLVAVADKTWNPMNKLSGLMNVRSCISHASEI 240
Query: 241 IMLSLKKETLWLPDSDEMLQGLLNKTSNIFSTAKDNLGQAIQRMANDAEAVTPVLSGMHS 300
IMLSLKKETLWLPDSDEMLQGLLNKTSNIFSTAKDNLGQAIQRMANDAEAVTPVLSGMHS
Sbjct: 241 IMLSLKKETLWLPDSDEMLQGLLNKTSNIFSTAKDNLGQAIQRMANDAEAVTPVLSGMHS 300
Query: 301 WETFPQSAEIHKATHLIMDYARLFWGHIDELNSILGQCWPHRILKCDIIEQMISNLIDHL 360
WETFPQSAEIHKATHLIMDYARLFWGHIDELNSILGQCWPHRILKCDIIEQMISNLIDHL
Sbjct: 301 WETFPQSAEIHKATHLIMDYARLFWGHIDELNSILGQCWPHRILKCDIIEQMISNLIDHL 360
Query: 361 EKKSESFSDPILS 373
EKKSESFSDPILS
Sbjct: 361 EKKSESFSDPILS 373
>Os05g0369300 Exo70 exocyst complex subunit family protein
Length = 520
Score = 231 bits (589), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 209/399 (52%), Gaps = 46/399 (11%)
Query: 3 LEPQLAITMELGRSSDPNISLQSRRHSYLQEIRSLAVDSA--GGWXXXXXXXXXXXXXXX 60
+E QL MEL S N + SRR+SYL++IRSL+V S GW
Sbjct: 1 METQLPTVMELDSSEPANFTQPSRRYSYLEKIRSLSVVSGEVAGWSSSASASSSRSARSS 60
Query: 61 XXXXXXXXXXXXAPYSISSSRRLARLEDKSP--------RDIARRMVRDGFMGKLIGEFG 112
P+ + R A + SP +DIAR+MV DGFM LI EF
Sbjct: 61 YYSSSMSSNASGGPH----NHRYAPYSNSSPGDIDLHGAQDIARQMVHDGFMVNLIREFD 116
Query: 113 RAPRPALERWFSELDVGWVLRS--ALEKEKSELALDKLYDLAVQRWTRGFTVMAEALSAT 170
RAP PALERWFSELDVGW+LRS A +KE+SEL L L V+RWTRG+TVMAEALSAT
Sbjct: 117 RAPGPALERWFSELDVGWLLRSAAAADKEQSELGLADL----VRRWTRGYTVMAEALSAT 172
Query: 171 QRH--------LQEEGR------STAQXXXXXXXXXXXFVEATVCKMLAFANSLVAVADK 216
Q L + R + FVEATV KMLAF ++L A+
Sbjct: 173 QTKVAGVPAIILPQAQRDHNNIMCDQELEDDLRLQFARFVEATVSKMLAFVDAL--AAEN 230
Query: 217 TWNPMNKLSGLMNVRSCIS---HASEIIMLSLKKETLWLPDSDEMLQGLLNKTSNIFSTA 273
T ++ LS L+ + SCI + +++++ +E + D LQ L K F
Sbjct: 231 TRLSIDNLSRLVGLCSCIYSCFYKCNVVVITDSEEIV-----DSELQCLGRKVVGAFIIT 285
Query: 274 KDNLGQAIQRMANDAEAVTPVLSGMHSWETFPQSAEIHKATHLIMDYARLFWGHIDELNS 333
L AI+ MA AEAVTPVL G S E F Q+AEIH+AT LI+DY RLFWG+ ++
Sbjct: 286 TTTLCNAIESMAMVAEAVTPVLIGWDSCENFKQNAEIHEATRLIVDYVRLFWGYQSLRSN 345
Query: 334 ILGQCWPHRILKCDIIEQMISNLIDHLEKKSESFSDPIL 372
+ W + +I QM+ N D LEK SESFSDP L
Sbjct: 346 MRYLKWVQ--IPITMIPQMLINFEDQLEKISESFSDPSL 382
>Os05g0369500 Exo70 exocyst complex subunit family protein
Length = 528
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 188/343 (54%), Gaps = 57/343 (16%)
Query: 82 RLARLEDKSPRDIARRMVRDGFMGKLIGEFGRAPRPALERWFSELDVGWVLRSALEKEKS 141
R+ + PRDIA +MVRDGF+ LIG FGRAP P LERWFSELDVGWVLR ++++
Sbjct: 51 RVVGFQVPGPRDIASQMVRDGFVLALIGAFGRAPGPVLERWFSELDVGWVLRPTDQQQQE 110
Query: 142 ELALDKLYDLAVQRWTRGFTVMAEALSATQRH------------------------LQEE 177
E ++ L V RWTR TVMA ALSATQ H + +
Sbjct: 111 EEEEEEAERL-VWRWTRALTVMAHALSATQGHLHDERSAAAAAAAAVAVVGGVEFAISQP 169
Query: 178 GRSTAQXXXXXXXXX---------------XXFVEATVCKMLAFANSLVAVADKTWNPM- 221
TA F + T+ KM+AFA +L A P
Sbjct: 170 PHHTAPAVASSSDHELLLRGVVGGGDDLCLVRFTDTTISKMIAFAAALAAAGKAGTCPTP 229
Query: 222 --NKLSGLMNVRSCISHASEIIMLSLKKETL--WLPDSDEMLQGLLNKTSNIFSTAKDNL 277
+ GLM V +CIS SEI+M +LK+E L LPDS++M Q L+NK + +D+L
Sbjct: 230 TADSFFGLMEVHTCISDVSEILMPALKQEALDLRLPDSEQM-QSLVNKIGEAMANTQDSL 288
Query: 278 GQAIQRMANDAEAVTPVLSGMHSWETFPQSAEIHKATHLIMDYARLFWGHIDELNSILG- 336
G+AI++ A DAEAVTPVLS M SWE F Q+ IH+AT LI+DYA LFWG+ L SIL
Sbjct: 289 GEAIRKTAKDAEAVTPVLSAMDSWEKFTQTEGIHRATRLIVDYASLFWGYRRVLESILCC 348
Query: 337 -------QCWPHRILKCDIIEQMISNLIDHLEKKSESFSDPIL 372
CW I++ +IEQMI +D LEKKSESFSDP L
Sbjct: 349 YRSESSQNCW--EIVQ-SLIEQMIITFLDQLEKKSESFSDPSL 388
>Os05g0368900
Length = 244
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 103/192 (53%), Gaps = 37/192 (19%)
Query: 110 EFGRAPRPALERWFSELDVGWVLRSALEKE-KSELALDKLYDLAVQRWTRGFTVMAEALS 168
+F R P ALERWFSELDVGWVLRSA EKE ++L LD L VQRWTRG+ VM EAL
Sbjct: 81 DFDREPDHALERWFSELDVGWVLRSAAEKELAAKLGLDDL----VQRWTRGYAVMVEALV 136
Query: 169 ATQRHLQEEGRSTAQXXXXXX-XXXXXFVEATVCKMLAFANSLVAVADKTWNPMNKL--S 225
ATQ++++ + + + FVEATV KML A + AD TW P++KL S
Sbjct: 137 ATQQNMKFQDHTNMELEDDLRPLQVTRFVEATVSKML--AFADALAADNTWRPIDKLSRS 194
Query: 226 GLMNVRSCISHA-----SEIIMLSLKKETLWLPDSDEMLQGLLNKTSNIFSTAKDNLGQA 280
LM + + I+ SEII+ + +K + FS A
Sbjct: 195 RLMCLCTSINECGIRILSEIIVFE--------------FDCIFSKMNGAFS--------A 232
Query: 281 IQRMANDAEAVT 292
I RMA DAEA+T
Sbjct: 233 IYRMAKDAEAIT 244
>Os08g0232700 Exo70 exocyst complex subunit family protein
Length = 526
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 24/248 (9%)
Query: 92 RDIARRMVRDGFMGKLIGEFGRAPRP---ALERWFSELDVGWVLRSALEK--EKSELALD 146
R IA++MV DG++ +LI FGR RP +RWFS+LDV +VL + +++
Sbjct: 91 RVIAQQMVGDGYIQELIRAFGRR-RPDELIFQRWFSQLDVDFVLVLHTDGMVRADSFSVE 149
Query: 147 KLYDLAVQRWTRGFTVMAEALSAT--QRHLQEEGRSTAQXXXXXXXXXXXFVEATVCKML 204
L L ++RW R M + L+ T + L G + F E ++ +ML
Sbjct: 150 DLMAL-IKRWIRALLTMVQVLNITLLELPLPVAGSTERMAAAADHAQFTGFAEESILRML 208
Query: 205 AFANSLVAVA-----DKTWNPMNKLSGLMNVRSCISHASEIIMLSLKKETLWLPDSDEML 259
AF +++ A D L G++ + +C+S A ++++ + + D +
Sbjct: 209 AFVDAVTLSALNVNDDHRHRTPELLPGMLQLYACVSEACDLLVSAGMGK-----DEITKM 263
Query: 260 QGLLNKTSNIFSTAKDNLGQAIQRMANDAEAVTPVLSGMHSWETFPQSAE--IHKATHLI 317
Q L + I ++ L AI M E V + W+ ++A H+ T L
Sbjct: 264 QALDAMNNGILMQSRRKLSDAIWVM---MEKVRALFLMDACWQVSQEAAASGTHETTELT 320
Query: 318 MDYARLFW 325
M+Y L W
Sbjct: 321 MNYITLLW 328
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,388,809
Number of extensions: 361209
Number of successful extensions: 764
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 6
Length of query: 373
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 271
Effective length of database: 11,709,973
Effective search space: 3173402683
Effective search space used: 3173402683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)