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Os05g0369900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.21 (0.064) R2 : 0.784
β1 : -6.88 (0.238) R2dD : 0.432 R2D : 0.316
β2 : 3.36 (0.193) R2dC : 0.226 R2C : 0.312
β3 : 1 (0.148) R2dE : 0.034 R2E : 0.12
β4 : -3.54 (0.87) R2dD*C : 0.0161 R2D*C : -0.0487
β5 : 2.83 (0.693) R2dD*E : 0.0162 R2D*E : -0.0424
γ1 : -1.46 (0.137) R2dN8 : 0.074 R2N8 : 0.0015
σ : 1.2
deviance : 649.45
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C
peak time of C : 21.8
E
wheather : radiation
threshold : 0.4199
memory length : 28
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23
open length of G : 21.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
649.45 1.2 8.21 -6.88 3.36 1 -3.54 2.83 -1.46 21.8 0.4199 28 23 21.1
681.01 1.22 8.21 -6.72 3.38 0.9 -0.882 -- -1.48 22 0.4199 28 23 21.1
679.41 1.22 8.2 -6.72 3.47 0.856 -- 0.598 -1.42 22 0.3897 27 23.3 21.3
676.64 1.21 8.2 -6.71 3.42 0.95 -- -- -1.44 21.9 0.4092 29 22.9 21.2
901.75 1.41 8.12 -6.55 -- 2.83 -- -0.223 -1.47 -- 0.585 16 22.6 23.4
716.15 1.25 8.23 -6.77 4.17 -- -0.627 -- -1.53 22.4 -- -- -- --
717.73 1.25 8.23 -6.75 4.17 -- -- -- -1.52 22.4 -- -- -- --
902.07 1.4 8.12 -6.56 -- 2.83 -- -- -1.47 -- 0.585 16 22.6 23.4
1846.48 2 8.09 -- 3.54 0.94 -- -- -0.79 21.5 0.04677 38 22.6 21.4
1780.56 1.97 8.12 -6.68 -- -- -- -- -1.51 -- -- -- -- --
1917.45 2.05 8.06 -- 4.13 -- -- -- -0.773 22.3 -- -- -- --
2010.63 2.09 7.96 -- -- 3.03 -- -- -0.773 -- 6.306e-06 23 23.5 24
2956.67 2.54 7.96 -- -- -- -- -- -0.768 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 656.86 radiation 1 30 < th dose dependent rect. 23 21
10 670.87 radiation 1 90 < th dose independent rect. 22 22
15 675.95 atmosphere 1000 10 > th dose dependent rect. 20 3
23 677.68 atmosphere 1005 43200 > th dose independent rect. 24 1
24 677.82 atmosphere 1005 43200 < th dose independent rect. 10 1
27 678.18 wind 1 43200 < th dose dependent rect. 17 3
30 678.58 temperature 20 4320 > th dose independent rect. 7 2
32 678.60 temperature 20 4320 < th dose independent rect. 7 2
34 678.73 wind 9 43200 > th dose independent rect. 5 1
37 678.80 atmosphere 1005 43200 > th dose independent rect. 10 1
41 678.87 wind 9 43200 < th dose independent rect. 5 1
45 679.06 wind 9 14400 > th dose independent rect. 6 4
49 679.19 atmosphere 1000 30 > th dose independent rect. 20 3
50 679.23 radiation 1 30 < th dose dependent rect. 17 12
59 679.39 temperature 30 30 < th dose dependent rect. 20 3
79 679.67 atmosphere 1005 43200 < th dose independent rect. 24 1
82 679.68 atmosphere 1010 43200 < th dose dependent rect. 22 1
100 679.96 temperature 10 90 > th dose dependent rect. 18 11
106 680.03 atmosphere 1010 43200 < th dose dependent rect. 24 1
115 680.14 atmosphere 1005 43200 < th dose independent rect. 24 11
117 680.14 temperature 30 90 < th dose dependent rect. 20 1
123 680.18 atmosphere 1005 43200 < th dose independent rect. 20 15
127 680.21 wind 5 30 < th dose independent rect. 19 10
135 680.30 atmosphere 1005 43200 > th dose independent rect. 20 5
159 680.49 atmosphere 1005 43200 > th dose independent rect. 21 1
160 680.49 atmosphere 995 270 > th dose dependent rect. 12 10
162 680.50 atmosphere 1005 43200 > th dose independent rect. 24 11
169 680.53 atmosphere 1005 43200 > th dose independent rect. 20 15
184 680.60 atmosphere 1010 43200 < th dose dependent rect. 21 11
211 680.67 wind 7 43200 > th dose dependent rect. 4 2
250 680.83 atmosphere 1005 43200 < th dose independent sin 7 NA
280 680.92 atmosphere 1010 43200 < th dose dependent sin 10 NA
285 680.94 atmosphere 1005 43200 < th dose independent rect. 21 1
331 681.02 radiation 1 30 < th dose dependent rect. 6 23
396 681.16 wind 9 43200 > th dose independent rect. 4 3
431 681.21 atmosphere 1010 43200 < th dose dependent rect. 6 1
432 681.21 atmosphere 1010 43200 < th dose dependent rect. 4 3
500 681.28 atmosphere 1010 43200 < th dose dependent rect. 12 14
520 681.30 atmosphere 1010 43200 < th dose dependent no NA NA
529 681.30 atmosphere 1010 43200 < th dose dependent rect. 5 22
600 681.37 atmosphere 1005 43200 > th dose independent sin 7 NA
638 681.43 atmosphere 1005 43200 < th dose independent rect. 20 6
653 681.45 atmosphere 1005 43200 < th dose dependent rect. 16 1
661 681.47 atmosphere 1010 43200 < th dose dependent rect. 13 1
669 681.49 atmosphere 1010 43200 < th dose dependent rect. 12 3
841 681.78 wind 9 14400 > th dose dependent rect. 6 4
850 681.80 temperature 30 30 < th dose independent rect. 23 21
852 681.80 atmosphere 1015 90 < th dose dependent rect. 18 11
931 681.94 temperature 25 720 < th dose dependent rect. 11 6
993 682.06 atmosphere 1015 720 < th dose dependent rect. 17 3
994 682.06 wind 7 43200 > th dose dependent rect. 2 4
999 682.08 humidity 90 4320 > th dose independent rect. 10 1