BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0368300 Os05g0368300|AK071862
         (263 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0368300  Similar to 40S ribosomal protein S4, X isoform...   479   e-136
Os02g0105900  Similar to 40S ribosomal protein S4                 451   e-127
Os01g0358400  Similar to 40S ribosomal protein S4                 450   e-127

>Os05g0368300 Similar to 40S ribosomal protein S4, X isoform (Single copy
           abundant mRNA protein) (SCR10)
          Length = 263

 Score =  479 bits (1233), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/249 (94%), Positives = 235/249 (94%)

Query: 1   MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 120
           VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK
Sbjct: 61  VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 120

Query: 121 FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNI 180
           FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNI
Sbjct: 121 FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNI 180

Query: 181 XXXXXXXXXXXXXXIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPK 240
                         IKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPK
Sbjct: 181 VMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPK 240

Query: 241 GKGIKLSII 249
           GKGIKLSII
Sbjct: 241 GKGIKLSII 249



>Os02g0105900 Similar to 40S ribosomal protein S4
          Length = 265

 Score =  451 bits (1161), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/249 (87%), Positives = 229/249 (91%)

Query: 1   MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHK+RECLPLILI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 120
           VISILMQRHV+VDGKVRTDKTYPAGFMDV+SI KTGEN+RLLYDTKGRFRL S+KDEDAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120

Query: 121 FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNI 180
           FKLCKVRSVQFGQKGIP+LNT DGRTIRYPDP+IKANDTIKIDLETNKIVDFIKFDVGN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180

Query: 181 XXXXXXXXXXXXXXIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPK 240
                         IK+REKHKGSFETIHVEDALGHQFATR+GNVFTIGK  KPWVSLPK
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPK 240

Query: 241 GKGIKLSII 249
           GKGIKLSII
Sbjct: 241 GKGIKLSII 249



>Os01g0358400 Similar to 40S ribosomal protein S4
          Length = 265

 Score =  450 bits (1158), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/249 (87%), Positives = 228/249 (91%)

Query: 1   MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHK+RECLPLILI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 120
           VISILMQRHV+VDGKVRTDKTYPAGFMDV+SI KTGEN+RLLYDTKGRFRL S+KDEDAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120

Query: 121 FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNI 180
           FKLCKVRSVQFGQKGIP+LNT DGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180

Query: 181 XXXXXXXXXXXXXXIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPK 240
                         IK+REKHKGSFETIHVEDALGH FATR+GNVFTIGK  KPWVSLPK
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPK 240

Query: 241 GKGIKLSII 249
           GKGIKLSII
Sbjct: 241 GKGIKLSII 249



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,047,134
Number of extensions: 311186
Number of successful extensions: 529
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)