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Os05g0368300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 40S ribosomal protein S4, X isoform (Single copy abundant mRNA protein) (SCR10).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.91 (0.0267) R2 : 0.197
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.667 (0.0684) R2dC : 0.168 R2C : 0.164
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.213 (0.0561) R2dN8 : 0.0327 R2N8 : 0.0286
σ : 0.503
deviance : 115.66
__
_____
C
peak time of C : 16.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.64 0.457 9.91 0.546 0.522 0.843 1.03 1.8 -0.193 18.2 16.66 95 -- --
98.92 0.463 9.9 0.585 0.531 0.642 1.05 -- -0.186 17.4 16.1 95 -- --
97.01 0.459 9.91 0.541 0.54 0.778 -- 1.81 -0.184 17.6 18.77 94 -- --
101.72 0.47 9.91 0.555 0.548 0.608 -- -- -0.179 17.6 12.27 92 -- --
109.88 0.488 9.9 0.514 -- 0.89 -- 1.83 -0.204 -- 14.2 128 -- --
104.63 0.48 9.9 0.556 0.673 -- 0.969 -- -0.155 16.2 -- -- -- --
107.22 0.485 9.89 0.566 0.678 -- -- -- -0.15 16.1 -- -- -- --
114.59 0.499 9.9 0.562 -- 0.722 -- -- -0.217 -- 6.749 162 -- --
109.55 0.49 9.91 -- 0.567 0.597 -- -- -0.207 17.6 10 92 -- --
132.14 0.537 9.89 0.538 -- -- -- -- -0.168 -- -- -- -- --
115.66 0.503 9.91 -- 0.667 -- -- -- -0.213 16.2 -- -- -- --
122.2 0.515 9.91 -- -- 0.695 -- -- -0.258 -- 3.845 179 -- --
139.79 0.552 9.9 -- -- -- -- -- -0.227 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.84 temperature 10.0 43200 > th dose independent rect. 9 7
3 86.82 radiation 40.0 90 < th dose independent rect. 3 16
4 87.06 temperature 10.0 90 > th dose dependent rect. 15 17
5 87.07 temperature 10.0 90 > th dose dependent rect. 8 7
8 87.87 temperature 10.0 270 > th dose dependent rect. 6 7
10 87.89 radiation 40.0 10 < th dose independent rect. 4 16
16 88.44 temperature 10.0 10 > th dose dependent rect. 15 17
62 89.45 radiation 40.0 90 < th dose dependent rect. 3 16
71 89.61 temperature 15.0 270 > th dose dependent rect. 8 3
78 89.71 temperature 15.0 90 > th dose independent rect. 15 17
80 89.73 humidity 50.0 90 > th dose independent rect. 8 7
82 89.75 temperature 15.0 270 > th dose dependent rect. 9 1
91 89.85 temperature 15.0 90 > th dose dependent rect. 3 5
95 89.93 precipitation 0.1 90 < th dose independent rect. 8 7
96 89.93 precipitation 0.1 90 < th dose dependent rect. 8 7
98 90.00 temperature 15.0 90 > th dose independent rect. 3 16
101 90.03 precipitation 0.1 90 < th dose independent rect. 19 8
102 90.03 precipitation 0.1 90 < th dose dependent rect. 19 8
105 90.05 wind 7.0 90 < th dose independent rect. 15 17
113 90.09 humidity 60.0 270 > th dose independent rect. 17 9
119 90.15 wind 5.0 270 < th dose independent rect. 23 9
121 90.16 temperature 10.0 90 > th dose independent rect. 8 7
122 90.16 atmosphere 1015.0 90 < th dose independent rect. 8 7
125 90.18 precipitation 0.1 90 < th dose independent rect. 3 16
126 90.18 precipitation 0.1 90 < th dose dependent rect. 3 16
127 90.19 wind 9.0 90 < th dose independent rect. 19 8
128 90.19 temperature 10.0 90 > th dose independent rect. 19 8
129 90.19 temperature 30.0 90 < th dose independent rect. 19 8
130 90.19 humidity 50.0 90 > th dose independent rect. 19 8
132 90.19 atmosphere 995.0 90 > th dose independent rect. 19 8
133 90.19 radiation 1.0 90 < th dose independent rect. 19 8
139 90.19 atmosphere 1015.0 90 < th dose independent rect. 3 16
140 90.19 radiation 1.0 90 < th dose dependent rect. 19 8
147 90.22 wind 1.0 90 > th dose independent rect. 8 7
153 90.25 humidity 50.0 270 > th dose independent rect. 5 22
156 90.29 humidity 50.0 90 > th dose independent rect. 8 19
158 90.30 wind 5.0 90 < th dose independent rect. 3 5
159 90.30 wind 9.0 90 < th dose independent rect. 8 7
160 90.30 radiation 1.0 90 > th dose independent rect. 8 7
165 90.35 wind 9.0 90 < th dose independent rect. 3 16
172 90.39 atmosphere 995.0 90 > th dose independent rect. 8 7
173 90.41 wind 3.0 4320 > th dose independent rect. 8 1
176 90.42 radiation 10.0 270 < th dose dependent rect. 17 9
177 90.43 humidity 50.0 270 > th dose independent rect. 6 8
180 90.45 radiation 40.0 90 < th dose independent rect. 15 17
186 90.51 wind 3.0 4320 < th dose independent rect. 8 1
194 90.59 temperature 20.0 90 > th dose independent rect. 8 7
197 90.60 precipitation 0.1 270 < th dose independent rect. 14 16
198 90.60 atmosphere 1015.0 90 < th dose independent rect. 15 17
200 90.60 precipitation 0.1 270 < th dose dependent rect. 14 16
205 90.64 atmosphere 995.0 90 > th dose independent rect. 15 17
223 90.73 wind 9.0 90 < th dose dependent rect. 3 5
224 90.74 temperature 30.0 270 < th dose independent rect. 17 9
239 90.83 radiation 1.0 270 < th dose independent rect. 17 9
247 90.91 precipitation 0.1 270 < th dose independent rect. 6 8
248 90.91 precipitation 0.1 270 < th dose dependent rect. 6 8
250 90.93 precipitation 0.1 90 < th dose independent rect. 3 5
251 90.93 precipitation 0.1 90 < th dose dependent rect. 3 5
255 90.95 radiation 1.0 270 < th dose dependent rect. 5 21
261 90.97 radiation 40.0 10 < th dose dependent rect. 4 16
273 91.03 wind 9.0 270 < th dose independent rect. 6 8
279 91.04 humidity 50.0 90 > th dose dependent rect. 19 8
282 91.05 radiation 1.0 90 > th dose dependent rect. 8 7
284 91.06 wind 9.0 90 < th dose independent rect. 8 19
290 91.08 temperature 10.0 90 > th dose independent rect. 3 5
292 91.08 temperature 30.0 90 < th dose independent rect. 3 5
293 91.08 humidity 50.0 90 > th dose independent rect. 3 5
295 91.08 atmosphere 995.0 90 > th dose independent rect. 3 5
296 91.08 atmosphere 1015.0 90 < th dose independent rect. 3 5
297 91.08 temperature 10.0 270 > th dose independent rect. 6 8
298 91.08 atmosphere 995.0 270 > th dose independent rect. 6 8
299 91.08 atmosphere 1015.0 270 < th dose independent rect. 6 8
304 91.08 temperature 10.0 90 > th dose independent rect. 8 19
307 91.09 atmosphere 995.0 90 > th dose independent rect. 3 16
319 91.16 radiation 40.0 90 < th dose independent rect. 3 5
329 91.18 wind 9.0 90 < th dose dependent rect. 3 16
330 91.18 wind 9.0 90 < th dose dependent rect. 15 17
333 91.19 temperature 30.0 90 < th dose dependent rect. 19 8
334 91.19 temperature 15.0 90 > th dose dependent rect. 23 9
339 91.21 humidity 50.0 270 > th dose independent rect. 8 16
345 91.23 humidity 90.0 90 < th dose independent rect. 8 7
346 91.23 humidity 50.0 270 > th dose independent rect. 19 18
360 91.27 radiation 1.0 270 < th dose dependent rect. 8 18
374 91.32 humidity 50.0 270 > th dose independent rect. 6 20
395 91.38 radiation 1.0 270 < th dose dependent rect. 12 14
401 91.40 wind 5.0 270 < th dose independent rect. 3 2
405 91.41 temperature 20.0 10 > th dose dependent rect. 24 8
413 91.43 temperature 10.0 1440 > th dose independent rect. 9 7
416 91.43 temperature 10.0 1440 > th dose independent rect. 16 17
419 91.43 temperature 30.0 10 < th dose dependent rect. 20 8
424 91.44 radiation 1.0 270 < th dose independent rect. 8 18
435 91.46 precipitation 0.1 90 < th dose independent rect. 8 19
438 91.46 precipitation 0.1 90 < th dose dependent rect. 8 19
439 91.47 temperature 20.0 270 > th dose independent rect. 6 8
481 91.56 radiation 1.0 270 < th dose independent rect. 12 14
496 91.59 atmosphere 1000.0 270 > th dose independent rect. 11 8
497 91.59 wind 7.0 270 < th dose dependent rect. 24 7
571 91.75 wind 7.0 10 < th dose dependent rect. 3 6
587 91.78 radiation 1.0 270 > th dose dependent rect. 8 3
614 91.83 radiation 1.0 270 > th dose independent rect. 13 17
618 91.85 humidity 50.0 270 > th dose independent rect. 17 21
619 91.85 temperature 15.0 270 > th dose dependent rect. 3 2
634 91.90 wind 9.0 270 < th dose dependent rect. 3 2
648 91.93 atmosphere 1000.0 10 > th dose independent rect. 20 8
658 91.94 wind 7.0 270 < th dose independent rect. 13 6
685 91.99 precipitation 0.1 270 < th dose independent rect. 12 7
686 91.99 radiation 20.0 270 < th dose independent rect. 24 8
688 91.99 precipitation 0.1 270 < th dose dependent rect. 12 7
697 92.01 radiation 30.0 90 < th dose independent rect. 3 8
710 92.03 radiation 1.0 270 > th dose independent rect. 6 8
720 92.05 precipitation 0.1 270 < th dose independent rect. 3 2
722 92.05 precipitation 0.1 270 < th dose dependent rect. 3 2
726 92.06 temperature 10.0 270 > th dose independent rect. 12 7
728 92.06 atmosphere 1015.0 270 < th dose independent rect. 12 7
729 92.06 temperature 10.0 270 > th dose independent rect. 19 17
730 92.06 atmosphere 995.0 270 > th dose independent rect. 19 17
739 92.08 radiation 1.0 270 > th dose dependent rect. 9 1
746 92.09 radiation 1.0 270 > th dose dependent rect. 6 6
767 92.12 wind 9.0 270 < th dose independent rect. 19 17
773 92.13 radiation 40.0 10 < th dose independent rect. 12 21
785 92.16 wind 3.0 4320 > th dose independent rect. 6 3
823 92.19 precipitation 0.1 270 < th dose independent rect. 24 8
827 92.19 precipitation 0.1 270 < th dose dependent rect. 24 8
859 92.25 radiation 1.0 10 > th dose dependent rect. 8 8
890 92.29 radiation 40.0 10 < th dose independent rect. 12 8
892 92.29 atmosphere 995.0 90 > th dose independent rect. 8 19
894 92.29 atmosphere 1015.0 90 < th dose dependent rect. 3 5
916 92.32 wind 3.0 4320 < th dose independent rect. 6 3
938 92.35 radiation 1.0 270 > th dose independent sin 16 NA
946 92.36 wind 1.0 270 > th dose independent rect. 6 8