BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0365200 Os05g0365200|AK120909
(535 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0365200 Conserved hypothetical protein 999 0.0
Os01g0316900 Conserved hypothetical protein 129 7e-30
Os05g0366300 Conserved hypothetical protein 125 1e-28
>Os05g0365200 Conserved hypothetical protein
Length = 535
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/521 (93%), Positives = 486/521 (93%)
Query: 15 DDKARDVTDQSKALGGNSCEDRALPSAVRVTVSGDPVGTFGSFGNMADYNVHLHQPDEGD 74
DDKARDVTDQSKALGGNSCEDRALPSAVRVTVSGDPVGTFGSFGNMADYNVHLHQPDEGD
Sbjct: 15 DDKARDVTDQSKALGGNSCEDRALPSAVRVTVSGDPVGTFGSFGNMADYNVHLHQPDEGD 74
Query: 75 DHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEVDSPFLGPTRTGADRASSAPRMVRR 134
DHGD GMEVDSPFLGPTRTGADRASSAPRMVRR
Sbjct: 75 DHGDSTECSSSFGPSCSASSDDDDDDTKSEMDGMEVDSPFLGPTRTGADRASSAPRMVRR 134
Query: 135 RQVTAEWRKIVGPIMWRCQWLELHMKNLLSQVAKYDRELAIINHEKDLQLEMVKADGPKS 194
RQVTAEWRKIVGPIMWRCQWLELHMKNLLSQVAKYDRELAIINHEKDLQLEMVKADGPKS
Sbjct: 135 RQVTAEWRKIVGPIMWRCQWLELHMKNLLSQVAKYDRELAIINHEKDLQLEMVKADGPKS 194
Query: 195 EPGKLYPQSHERIIMXXXXXXXDEDTVDTSLYLKRHPALSYYENKNSGVQTDGPLVNGGF 254
EPGKLYPQSHERIIM DEDTVDTSLYLKRHPALSYYENKNSGVQTDGPLVNGGF
Sbjct: 195 EPGKLYPQSHERIIMKRRKRKRDEDTVDTSLYLKRHPALSYYENKNSGVQTDGPLVNGGF 254
Query: 255 DSSVVEDIESTDDALVENDRVFEQYSLREILLTVDDVQSRILSLQGRLSNARSKYKKLSQ 314
DSSVVEDIESTDDALVENDRVFEQYSLREILLTVDDVQSRILSLQGRLSNARSKYKKLSQ
Sbjct: 255 DSSVVEDIESTDDALVENDRVFEQYSLREILLTVDDVQSRILSLQGRLSNARSKYKKLSQ 314
Query: 315 CLDRKQVKVPQKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDC 374
CLDRKQVKVPQKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDC
Sbjct: 315 CLDRKQVKVPQKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDC 374
Query: 375 VLECMKKNDAQEDAVQSDLNGITIEMFCGKDNFLTNAHVGELYKESADDVLIDNQAAKEG 434
VLECMKKNDAQEDAVQSDLNGITIEMFCGKDNFLTNAHVGELYKESADDVLIDNQAAKEG
Sbjct: 375 VLECMKKNDAQEDAVQSDLNGITIEMFCGKDNFLTNAHVGELYKESADDVLIDNQAAKEG 434
Query: 435 YQLFEKVKPEEHSELVMPPSKVQKASADIVDYEQVQETAPVAKQIISGDKRGQKPNKKHG 494
YQLFEKVKPEEHSELVMPPSKVQKASADIVDYEQVQETAPVAKQIISGDKRGQKPNKKHG
Sbjct: 435 YQLFEKVKPEEHSELVMPPSKVQKASADIVDYEQVQETAPVAKQIISGDKRGQKPNKKHG 494
Query: 495 LPVLAKKIKTEKDPGNMKNEKTVLVAVDPRRSTRVRKPKTY 535
LPVLAKKIKTEKDPGNMKNEKTVLVAVDPRRSTRVRKPKTY
Sbjct: 495 LPVLAKKIKTEKDPGNMKNEKTVLVAVDPRRSTRVRKPKTY 535
>Os01g0316900 Conserved hypothetical protein
Length = 314
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 96/148 (64%), Gaps = 11/148 (7%)
Query: 107 GMEVDSPFLGPTRTGADRASSAPRMVR--RRQVTAEWRKIVGPIMWRCQWLELHMKNLLS 164
G EVDSPF ++ A ++R +++VTAEWR V P+MWRCQWLEL MK+LLS
Sbjct: 159 GSEVDSPF-------SENADGVQALIRPRKKKVTAEWRSAVRPMMWRCQWLELRMKDLLS 211
Query: 165 QVAKYDRELAIINHEKDLQLEMVKADGPKSEPGKLYPQSHERIIMXXXXXXXDEDTVDTS 224
QV+KYDRELA+IN K+LQ + +G +SE + +S E M E+TV+TS
Sbjct: 212 QVSKYDRELALINKGKELQQAVNMTNGSRSESAQ-SSKSRENSCMERRKRRRLEETVNTS 270
Query: 225 LYLKRHPALSYYENK-NSGVQTDGPLVN 251
LY+K+H LSY+ +K N G +TDG L++
Sbjct: 271 LYIKKHEILSYFFDKQNKGAETDGILID 298
>Os05g0366300 Conserved hypothetical protein
Length = 462
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 168/346 (48%), Gaps = 52/346 (15%)
Query: 108 MEVDSPFL-----GPTRTGADRASS--APRMVRRRQVTAEWRKIVGPIMWRCQWLELHMK 160
+EVDSPF G D A S R++++++VT WRK + P+MWRCQWLEL MK
Sbjct: 68 IEVDSPFCRYPANGDAAALMDAAVSDNLDRLLKKKRVTDHWRKYISPLMWRCQWLELRMK 127
Query: 161 NLLSQVAKYDRELAIINHEKDLQLEMVKADGPKSEPGKLYPQSHERIIMXXXXXXXDEDT 220
+L SQV++YDR+LA++ HEK+LQ +M++ D S + M +E+
Sbjct: 128 DLQSQVSRYDRQLAVLKHEKELQTKMIELDCSSSRSVPFSSHCCRKT-MKRRRRKRNEEK 186
Query: 221 VDTSLYLKRHPALSYYENKNSGVQTDGPLVNGGFDSSVVEDIESTDDALVENDRVFEQYS 280
++ S Y+ H SYYE + D ++ D+ + + D L+ R + +
Sbjct: 187 MNASSYISNHTVFSYYEK----TEADAFSIDDDEDTDENTTVNNETDWLLGIKR--GEAT 240
Query: 281 LREILLTVDDVQSRILSLQGRLSNARSKYKKLSQCLDRKQVKVPQKIQNQMTCCKKDGRR 340
+ +ILL++ Q ++LSL+ L A +K K K+ M +G +
Sbjct: 241 VEQILLSIQSAQDKVLSLRSSLKKAMAKKSK----------GAILKVNTHM-----NGAQ 285
Query: 341 SHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDCVLECMKKNDAQ--EDAVQSDLNGITI 398
S + +L++ D S DC + +DA E A+ S +
Sbjct: 286 SSSCSPGKGKVLERSPRDMS------------DCDM-----DDAAMPESALSSYGEANDM 328
Query: 399 EMFCGKDNFLTNA---HVGELYKESADDVLIDNQAAKEGYQLFEKV 441
++F + L+ +GE + +S++DVLIDNQAA+EGYQ FE +
Sbjct: 329 DIFESTMSLLSAEVPHQMGEFH-QSSEDVLIDNQAAEEGYQNFEVI 373
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,804,665
Number of extensions: 654337
Number of successful extensions: 1298
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1290
Number of HSP's successfully gapped: 3
Length of query: 535
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 429
Effective length of database: 11,501,117
Effective search space: 4933979193
Effective search space used: 4933979193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)