BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0358700 Os05g0358700|J075150K01
         (59 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0358700  Similar to Phospholipase D2 (EC 3.1.4.4) (PLD ...   122   6e-29

>Os05g0358700 Similar to Phospholipase D2 (EC 3.1.4.4) (PLD 2) (Choline
          phosphatase 2) (Phosphatidylcholine-hydrolyzing
          phospholipase D2) (PLD1C) (mPLD2)
          Length = 59

 Score =  122 bits (306), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  HVKYLALQIYVHSKLMIIDDRITLIGSANINDRSLLGSRDSEVCFSHIPVSTIFWYVAP 59
          HVKYLALQIYVHSKLMIIDDRITLIGSANINDRSLLGSRDSEVCFSHIPVSTIFWYVAP
Sbjct: 1  HVKYLALQIYVHSKLMIIDDRITLIGSANINDRSLLGSRDSEVCFSHIPVSTIFWYVAP 59



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,728,894
Number of extensions: 47642
Number of successful extensions: 96
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 59
Length of database: 17,035,801
Length adjustment: 31
Effective length of query: 28
Effective length of database: 15,417,167
Effective search space: 431680676
Effective search space used: 431680676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)