Os05g0358700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phospholipase D2 (EC 3.1.4.4) (PLD 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D2) (PLD1C) (mPLD2).
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Os05g0358700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phospholipase D2 (EC 3.1.4.4) (PLD 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D2) (PLD1C) (mPLD2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.5 | 0.31 | 9.09 | 0.272 | 0.976 | 2.09 | 0.569 | -0.988 | 0.087 | 10.1 | 28.58 | 321 | -- | -- |
| 44.02 | 0.309 | 9.1 | 0.064 | 1.02 | 2.1 | 0.705 | -- | 0.0476 | 9.36 | 25.75 | 341 | -- | -- |
| 44.7 | 0.311 | 9.09 | 0.287 | 0.943 | 2.1 | -- | -0.94 | 0.0895 | 10.1 | 28.59 | 341 | -- | -- |
| 45.38 | 0.314 | 9.1 | 0.108 | 1.02 | 2.07 | -- | -- | 0.0379 | 9.23 | 25.7 | 347 | -- | -- |
| 72.92 | 0.398 | 9.11 | 0.429 | -- | 2.75 | -- | -0.973 | 0.106 | -- | 31.71 | 605 | -- | -- |
| 105.97 | 0.483 | 9.2 | -0.444 | 1.24 | -- | 0.598 | -- | -0.409 | 8.35 | -- | -- | -- | -- |
| 107.09 | 0.485 | 9.2 | -0.427 | 1.24 | -- | -- | -- | -0.409 | 8.32 | -- | -- | -- | -- |
| 73.83 | 0.4 | 9.12 | 0.262 | -- | 2.7 | -- | -- | 0.0738 | -- | 31.05 | 606 | -- | -- |
| 45.62 | 0.315 | 9.11 | -- | 1.03 | 2.02 | -- | -- | 0.0127 | 9.19 | 25.7 | 350 | -- | -- |
| 191.79 | 0.647 | 9.23 | -0.419 | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
| 111.88 | 0.495 | 9.19 | -- | 1.23 | -- | -- | -- | -0.362 | 8.35 | -- | -- | -- | -- |
| 75.41 | 0.404 | 9.13 | -- | -- | 2.61 | -- | -- | 0.03 | -- | 31.23 | 600 | -- | -- |
| 196.42 | 0.654 | 9.22 | -- | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 6 | 43.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 25 | 44.67 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 50 | 45.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 58 | 45.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 68 | 46.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 69 | 46.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 96 | 46.64 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 115 | 46.77 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 162 | 47.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 210 | 47.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 8 |
| 213 | 47.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 226 | 47.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 240 | 47.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 288 | 47.82 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 298 | 47.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 324 | 47.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 370 | 48.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 442 | 48.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 467 | 48.30 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |