BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0320500 Os05g0320500|Os05g0320500
         (97 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0320500                                                      201   7e-53
Os10g0429500  TRAF-like domain containing protein                  89   9e-19
Os11g0210400                                                       88   2e-18
Os04g0141300                                                       87   3e-18
Os01g0498100                                                       81   2e-16
Os03g0623000                                                       80   3e-16
Os04g0275300                                                       78   1e-15

>Os05g0320500 
          Length = 97

 Score =  201 bits (512), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIPRVAL 60
          MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIPRVAL
Sbjct: 1  MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIPRVAL 60

Query: 61 KDEQRHNVLSGGVEMNVRNNYIRIDQIQYELPLIITF 97
          KDEQRHNVLSGGVEMNVRNNYIRIDQIQYELPLIITF
Sbjct: 61 KDEQRHNVLSGGVEMNVRNNYIRIDQIQYELPLIITF 97



>Os10g0429500 TRAF-like domain containing protein
          Length = 1197

 Score = 88.6 bits (218), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 1    MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIP 56
            ++H+NRH  TTKNVL I   DGR+IF D+GWPGSVHD R+LNE +  YP +FP++P
Sbjct: 1062 IEHMNRHDETTKNVLTIVGFDGRVIFADAGWPGSVHDNRVLNEAIDSYPEEFPRLP 1117



>Os11g0210400 
          Length = 672

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 1   MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIP 56
           ++H+NRH  TTKNVL I   DGR+IF D+GWPGSVHD R+LNE +  YP +FP++P
Sbjct: 537 IEHMNRHDETTKNVLTIVGFDGRVIFADAGWPGSVHDNRVLNEAIDSYPEEFPRLP 592



>Os04g0141300 
          Length = 758

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 1   MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIP 56
           ++H+NRH  TTKNVL I   DGR+IF D+GWPGSVHD R+LNE +  YP +FP++P
Sbjct: 552 IEHMNRHDETTKNVLTIVGFDGRVIFADAGWPGSVHDNRVLNEAIDSYPEEFPRLP 607



>Os01g0498100 
          Length = 533

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 43/54 (79%)

Query: 3   HINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIP 56
           H NRHH+T++NVLV+   D R+IF D+GW G+VHDQR+L E ++ YP+ FP++P
Sbjct: 340 HRNRHHITSRNVLVVIGWDDRVIFADAGWLGAVHDQRVLTEAIRNYPHSFPRLP 393



>Os03g0623000 
          Length = 701

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query: 1   MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIP 56
           ++H+NRH  TTKNVL I   DGR+IF D+GW GSVHD R+LNE +  YP +FP++P
Sbjct: 495 IEHMNRHDETTKNVLTIVGFDGRVIFADAGWLGSVHDNRVLNEAIDSYPEEFPRLP 550



>Os04g0275300 
          Length = 285

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 1   MQHINRHHVTTKNVLVICDHDGRIIFCDSGWPGSVHDQRILNEDVQYYPNDFPQIP 56
           +QH N HH+T++NVL +   D R+IF D+GWPGSVHDQR+L E V+ YP  FP++P
Sbjct: 51  IQHRNCHHITSRNVLFVVGWDDRVIFADAGWPGSVHDQRVLTEAVRSYPFAFPRLP 106



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.143    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,527,792
Number of extensions: 134363
Number of successful extensions: 358
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 7
Length of query: 97
Length of database: 17,035,801
Length adjustment: 66
Effective length of query: 31
Effective length of database: 13,589,677
Effective search space: 421279987
Effective search space used: 421279987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)