Os05g0320500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0320500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.66 | 0.769 | 3.32 | -0.59 | 13.6 | -12.1 | 33.6 | -32.8 | 0.126 | 5.04 | 70.3 | 732 | 18.9 | 7.95 |
| 386.89 | 0.923 | 3.65 | -0.249 | 2.27 | -1.3 | 0.35 | -- | -0.102 | 2.35 | 66.56 | 740 | 20.3 | 6.73 |
| 413.09 | 0.954 | 3.67 | -0.23 | 1.95 | -1.02 | -- | -0.556 | -0.159 | 2.15 | 70.3 | 732 | 18.9 | 7.95 |
| 385.65 | 0.921 | 3.68 | -0.263 | 2.33 | -1.41 | -- | -- | -0.181 | 1.75 | 51.2 | 5810 | 19.4 | 8.05 |
| 442.16 | 0.979 | 3.66 | -0.468 | -- | 1.4 | -- | 0.328 | -0.0519 | -- | 54.1 | 6371 | 18.7 | 7.99 |
| 447.47 | 0.992 | 3.64 | -0.175 | 1.52 | -- | 0.868 | -- | -0.159 | 4.25 | -- | -- | -- | -- |
| 449.56 | 0.993 | 3.65 | -0.184 | 1.53 | -- | -- | -- | -0.164 | 4.24 | -- | -- | -- | -- |
| 399.33 | 0.931 | 3.72 | -0.188 | -- | 1.45 | -- | -- | -0.194 | -- | 54.95 | 6073 | 22.8 | 6.68 |
| 374.8 | 0.902 | 3.67 | -- | 2.73 | -1.76 | -- | -- | -0.148 | 1.77 | 51.92 | 5810 | 19.5 | 7.98 |
| 575.65 | 1.12 | 3.65 | -0.122 | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
| 450.45 | 0.993 | 3.64 | -- | 1.52 | -- | -- | -- | -0.144 | 4.24 | -- | -- | -- | -- |
| 383.68 | 0.912 | 3.67 | -- | -- | 2 | -- | -- | -0.184 | -- | 57.34 | 6064 | 23.7 | 5 |
| 576.04 | 1.12 | 3.65 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.87 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 40 | 277.94 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 61 | 284.20 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 76 | 285.59 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 119 | 292.38 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 121 | 292.67 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 164 | 297.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 189 | 298.57 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 195 | 299.21 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 196 | 299.41 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 3 |
| 198 | 299.79 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 3 |
| 202 | 300.27 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 204 | 300.28 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 206 | 300.45 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 228 | 301.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 233 | 301.59 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 251 | 302.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 297 | 303.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 299 | 303.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 308 | 303.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 313 | 303.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 326 | 304.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 342 | 305.53 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 364 | 306.14 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 377 | 306.72 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 484 | 308.78 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 485 | 308.79 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 536 | 309.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 541 | 309.64 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 545 | 309.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 547 | 309.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 568 | 310.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 571 | 310.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 572 | 310.54 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 583 | 310.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 587 | 310.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 589 | 310.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 594 | 310.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 661 | 311.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 684 | 311.59 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 758 | 311.89 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 801 | 312.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 811 | 312.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 832 | 312.52 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 876 | 312.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |