BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0316100 Os05g0316100|AK066887
(577 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0316100 Zinc/iron permease family protein 895 0.0
>Os05g0316100 Zinc/iron permease family protein
Length = 577
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/577 (80%), Positives = 465/577 (80%)
Query: 1 MDSRVGXXXXXXXXXXXRDVSXXXXXXXXXXXXXXXXPDRKLEGAGGQDGFKSGKVPVST 60
MDSRVG RDVS PDRKLEGAGGQDGFKSGKVPVST
Sbjct: 1 MDSRVGVVLFFLLFVLVRDVSAVAETEVGVVRVVQEAPDRKLEGAGGQDGFKSGKVPVST 60
Query: 61 VAWSXXXXXXXXXXXXXPFFFLELEAQWAGLCNGLAAGVMLAASFDLVQEGQMYGSGSWV 120
VAWS PFFFLELEAQWAGLCNGLAAGVMLAASFDLVQEGQMYGSGSWV
Sbjct: 61 VAWSTLAMAAATGLGALPFFFLELEAQWAGLCNGLAAGVMLAASFDLVQEGQMYGSGSWV 120
Query: 121 VFGILSGGFFIWLCKKFLEQYGEVSMLDIKGADASKVILVVGIMTLHXXXXXXXXXXXXX 180
VFGILSGGFFIWLCKKFLEQYGEVSMLDIKGADASKVILVVGIMTLH
Sbjct: 121 VFGILSGGFFIWLCKKFLEQYGEVSMLDIKGADASKVILVVGIMTLHSFGEGSGVGVSFA 180
Query: 181 XXXXXXQGLLVTIAIAVHNIPEGLAVSMLLSSRGVSPQKAMIWSIITSLPQPIVAVPAFL 240
QGLLVTIAIAVHNIPEGLAVSMLLSSRGVSPQKAMIWSIITSLPQPIVAVPAFL
Sbjct: 181 GSKGFSQGLLVTIAIAVHNIPEGLAVSMLLSSRGVSPQKAMIWSIITSLPQPIVAVPAFL 240
Query: 241 CADAFQKVLPFCTGFAAGCMIWIVIAEVLPDAFKEAAPSQVASAGTLAVAFMETLGTVLQ 300
CADAFQKVLPFCTGFAAGCMIWIVIAEVLPDAFKEAAPSQVASAGTLAVAFMETLGTVLQ
Sbjct: 241 CADAFQKVLPFCTGFAAGCMIWIVIAEVLPDAFKEAAPSQVASAGTLAVAFMETLGTVLQ 300
Query: 301 GFTDGHNSEDTAGFLVSLVFGLGPLFGGIVLVAFSLTFSMPHPLLTGVASGIAFRLAAWR 360
GFTDGHNSEDTAGFLVSLVFGLGPLFGGIVLVAFSLTFSMPHPLLTGVASGIAFRLAAWR
Sbjct: 301 GFTDGHNSEDTAGFLVSLVFGLGPLFGGIVLVAFSLTFSMPHPLLTGVASGIAFRLAAWR 360
Query: 361 PLQLLMSSKMGXXXXXXXXXXXXXXYHVATSNILQLVNRKKSSVNVITXXXXXXXXXXXX 420
PLQLLMSSKMG YHVATSNILQLVNRKKSSVNVIT
Sbjct: 361 PLQLLMSSKMGLFTTLFLLIGGSLIYHVATSNILQLVNRKKSSVNVITSSSGLSLSVLTL 420
Query: 421 XXXXACGSVFLHAYAEGLQLGVAARKAYGLGRYMVLPVSLHGLPRGAAVASCIYGXXXXX 480
ACGSVFLHAYAEGLQLGVAARKAYGLGRYMVLPVSLHGLPRGAAVASCIYG
Sbjct: 421 QSLLACGSVFLHAYAEGLQLGVAARKAYGLGRYMVLPVSLHGLPRGAAVASCIYGATDSW 480
Query: 481 XXXXXXXXXXXXXXXXXXISAILAKIDYSGLDYWMVIACGALIPSFGRVFKRSLRLDMRK 540
ISAILAKIDYSGLDYWMVIACGALIPSFGRVFKRSLRLDMRK
Sbjct: 481 RAALAAAALTGFAGPSAAISAILAKIDYSGLDYWMVIACGALIPSFGRVFKRSLRLDMRK 540
Query: 541 SICGLLIGFAFASVCLMSTRFICLHTPYCNSAPEAVT 577
SICGLLIGFAFASVCLMSTRFICLHTPYCNSAPEAVT
Sbjct: 541 SICGLLIGFAFASVCLMSTRFICLHTPYCNSAPEAVT 577
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,072,540
Number of extensions: 526719
Number of successful extensions: 1295
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1293
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 471
Effective length of database: 11,501,117
Effective search space: 5417026107
Effective search space used: 5417026107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)