BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0299200 Os05g0299200|Os05g0299200
         (463 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0299200  Conserved hypothetical protein                      601   e-172

>Os05g0299200 Conserved hypothetical protein
          Length = 463

 Score =  601 bits (1549), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 317/442 (71%), Positives = 317/442 (71%)

Query: 22  LPLLSRYQLPRAHRAASTVAFAARRFRGVNPSSDRPRGRXXXXXXXXXXXXXXDDXXXXX 81
           LPLLSRYQLPRAHRAASTVAFAARRFRGVNPSSDRPRGR              DD     
Sbjct: 22  LPLLSRYQLPRAHRAASTVAFAARRFRGVNPSSDRPRGRRASVPAAPTTSAARDDGGGGG 81

Query: 82  XIDXXXXXXXXXXXXXXXXXXXXXXXXXXXYRDLRYSARVVGGDRVVLTFXXXXXXXXXX 141
            ID                           YRDLRYSARVVGGDRVVLTF          
Sbjct: 82  GIDALEAELWRLHRRAELRLHRLAAEADEAYRDLRYSARVVGGDRVVLTFRRSSLRFAAA 141

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXQRRGLXXXXXXXXXXXXXXDRSLGGKXXXXXXXXXXX 201
                                  QRRGL              DRSLGGK           
Sbjct: 142 ALLWSLALSAAAWALLGWAVRAWQRRGLGWRGGEGAAVVRRRDRSLGGKEVVVAVSSSPV 201

Query: 202 XXXXXXXXXXXXEVKRREPKARLPEWWPELREEVVVDQGPGMEKWARLANRLVRAIIDNR 261
                       EVKRREPKARLPEWWPELREEVVVDQGPGMEKWARLANRLVRAIIDNR
Sbjct: 202 AAPVSRVPEPAREVKRREPKARLPEWWPELREEVVVDQGPGMEKWARLANRLVRAIIDNR 261

Query: 262 ITGKDYKYDDAIQLRQLCKISGVKVSFDTENARDSFYRAAINFVLDDCSRAAQDIGAAQI 321
           ITGKDYKYDDAIQLRQLCKISGVKVSFDTENARDSFYRAAINFVLDDCSRAAQDIGAAQI
Sbjct: 262 ITGKDYKYDDAIQLRQLCKISGVKVSFDTENARDSFYRAAINFVLDDCSRAAQDIGAAQI 321

Query: 322 SGENPRNFLAGLASNIGLDKFRAATLVCASVAARTRSLFLQCWALEMQGKRSEALDELSK 381
           SGENPRNFLAGLASNIGLDKFRAATLVCASVAARTRSLFLQCWALEMQGKRSEALDELSK
Sbjct: 322 SGENPRNFLAGLASNIGLDKFRAATLVCASVAARTRSLFLQCWALEMQGKRSEALDELSK 381

Query: 382 ICRIHNMFPPEENSAEMEMVAGGLKKNLQVAERVHLLSLYRSICTAGNIRTAAEAXXXXX 441
           ICRIHNMFPPEENSAEMEMVAGGLKKNLQVAERVHLLSLYRSICTAGNIRTAAEA     
Sbjct: 382 ICRIHNMFPPEENSAEMEMVAGGLKKNLQVAERVHLLSLYRSICTAGNIRTAAEALGLGK 441

Query: 442 XXXPDTTNCYGWGVGLQRDDEV 463
              PDTTNCYGWGVGLQRDDEV
Sbjct: 442 LKLPDTTNCYGWGVGLQRDDEV 463



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,132,804
Number of extensions: 319661
Number of successful extensions: 769
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)