BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0296200 Os05g0296200|AK064523
(71 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0296200 Conserved hypothetical protein 146 3e-36
Os09g0477000 105 8e-24
Os10g0523300 105 1e-23
Os05g0155900 94 3e-20
Os02g0288975 77 3e-15
>Os05g0296200 Conserved hypothetical protein
Length = 71
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 IGGSYDGIPPGAMSCLSWNCRGIGNATTVRDLCALAREAGSKLVFLCETRQKVDKMRRIR 60
IGGSYDGIPPGAMSCLSWNCRGIGNATTVRDLCALAREAGSKLVFLCETRQKVDKMRRIR
Sbjct: 1 IGGSYDGIPPGAMSCLSWNCRGIGNATTVRDLCALAREAGSKLVFLCETRQKVDKMRRIR 60
Query: 61 NKIGLRGFCWS 71
NKIGLRGFCWS
Sbjct: 61 NKIGLRGFCWS 71
>Os09g0477000
Length = 1605
Score = 105 bits (262), Expect = 8e-24, Method: Composition-based stats.
Identities = 44/58 (75%), Positives = 52/58 (89%)
Query: 11 GAMSCLSWNCRGIGNATTVRDLCALAREAGSKLVFLCETRQKVDKMRRIRNKIGLRGF 68
G MSCLSWNCRGIGNATTVRDLC L +E GS LVFLCETRQKV+++R +RN++GL+GF
Sbjct: 472 GEMSCLSWNCRGIGNATTVRDLCTLVKEVGSHLVFLCETRQKVERIRHLRNRLGLKGF 529
>Os10g0523300
Length = 1585
Score = 105 bits (261), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/58 (75%), Positives = 54/58 (93%)
Query: 11 GAMSCLSWNCRGIGNATTVRDLCALAREAGSKLVFLCETRQKVDKMRRIRNKIGLRGF 68
GAM+CLSWNCRGIGNATTV++LCAL +EA S+ VFLCETRQ VDK++R+RN++GLRGF
Sbjct: 460 GAMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGF 517
>Os05g0155900
Length = 1936
Score = 93.6 bits (231), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 11 GAMSCLSWNCRGIGNATTVRDLCALAREAGSKLVFLCETRQKVDKMRRIRNKIGLRGF 68
GAMSCL+WNCRG+GN TV+DL AL ++AGS+LVFLCETRQ V+KM R+R K+ RGF
Sbjct: 634 GAMSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGF 691
>Os02g0288975
Length = 489
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 41/45 (91%)
Query: 24 GNATTVRDLCALAREAGSKLVFLCETRQKVDKMRRIRNKIGLRGF 68
GNA TVRDLCAL +EAGS +VFL ETRQK++K+RR+RN++GL+GF
Sbjct: 90 GNAATVRDLCALVKEAGSHIVFLSETRQKIEKVRRLRNRLGLKGF 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,748,819
Number of extensions: 87303
Number of successful extensions: 277
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 7
Length of query: 71
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 29
Effective length of database: 14,842,813
Effective search space: 430441577
Effective search space used: 430441577
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)