BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0273500 Os05g0273500|AK066374
(539 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0273500 Conserved hypothetical protein 960 0.0
>Os05g0273500 Conserved hypothetical protein
Length = 539
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/539 (89%), Positives = 480/539 (89%)
Query: 1 MAMALALSXXXXXXXXXXXXXXXXXXXXHFHVHYHLPRRVCASSFVPNLLPRFFSLLSAC 60
MAMALALS HFHVHYHLPRRVCASSFVPNLLPRFFSLLSAC
Sbjct: 1 MAMALALSCGRRQRGKKGGGGGGDCGGRHFHVHYHLPRRVCASSFVPNLLPRFFSLLSAC 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXIRSLWNKDINGETFERSSNDHGSDADKRLXXXXX 120
IRSLWNKDINGETFERSSNDHGSDADKRL
Sbjct: 61 VLVPPVLFLAVLAFLVLFLWFTLLYFIRSLWNKDINGETFERSSNDHGSDADKRLGEGVA 120
Query: 121 XXXXXXXXTLKISSEDCARRFEIEEVLHVNSDDSQNLPSMVSSDGCLNCKMHTDDEKLIK 180
TLKISSEDCARRFEIEEVLHVNSDDSQNLPSMVSSDGCLNCKMHTDDEKLIK
Sbjct: 121 EEGKAEKKTLKISSEDCARRFEIEEVLHVNSDDSQNLPSMVSSDGCLNCKMHTDDEKLIK 180
Query: 181 EVTVFEIKRRESGAAIVCSDGLSQKRQPRDMSVDWFEEETKSGDIIKSGDSSPTVLSTFS 240
EVTVFEIKRRESGAAIVCSDGLSQKRQPRDMSVDWFEEETKSGDIIKSGDSSPTVLSTFS
Sbjct: 181 EVTVFEIKRRESGAAIVCSDGLSQKRQPRDMSVDWFEEETKSGDIIKSGDSSPTVLSTFS 240
Query: 241 SEFHDFSDNNEVVGLATDFLDVNNQNKAVLLDSSSHRGIMDNHCKCGEEFSSDKEAPAYH 300
SEFHDFSDNNEVVGLATDFLDVNNQNKAVLLDSSSHRGIMDNHCKCGEEFSSDKEAPAYH
Sbjct: 241 SEFHDFSDNNEVVGLATDFLDVNNQNKAVLLDSSSHRGIMDNHCKCGEEFSSDKEAPAYH 300
Query: 301 LFENYDFVDKHETKEVVLGDTVVLTFVDDLANDDSEYREDISEQKDPNNLSGLLDNVADI 360
LFENYDFVDKHETKEVVLGDTVVLTFVDDLANDDSEYREDISEQKDPNNLSGLLDNVADI
Sbjct: 301 LFENYDFVDKHETKEVVLGDTVVLTFVDDLANDDSEYREDISEQKDPNNLSGLLDNVADI 360
Query: 361 FYQQQEIHKVVVSDDNKPPEVLFLSGKQTVSSSGEFSSPNENGTSGFPFDSVCEDKNGTV 420
FYQQQEIHKVVVSDDNKPPEVLFLSGKQTVSSSGEFSSPNENGTSGFPFDSVCEDKNGTV
Sbjct: 361 FYQQQEIHKVVVSDDNKPPEVLFLSGKQTVSSSGEFSSPNENGTSGFPFDSVCEDKNGTV 420
Query: 421 AYPSVASHYNIGIEDDKCEDHTDNNIEEASSIASTNCGSADKHQTIQVLPVCLANGDNID 480
AYPSVASHYNIGIEDDKCEDHTDNNIEEASSIASTNCGSADKHQTIQVLPVCLANGDNID
Sbjct: 421 AYPSVASHYNIGIEDDKCEDHTDNNIEEASSIASTNCGSADKHQTIQVLPVCLANGDNID 480
Query: 481 DVASLGSSICEDVEDKDNKSNANCISEGAPHGNGMPLVRSPASWWNLCGVIDVFAGCKD 539
DVASLGSSICEDVEDKDNKSNANCISEGAPHGNGMPLVRSPASWWNLCGVIDVFAGCKD
Sbjct: 481 DVASLGSSICEDVEDKDNKSNANCISEGAPHGNGMPLVRSPASWWNLCGVIDVFAGCKD 539
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,681,104
Number of extensions: 745955
Number of successful extensions: 1478
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1475
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)