Os05g0273500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0273500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.49 | 0.638 | 6.5 | -0.929 | 1.14 | -1.49 | -0.198 | -2.02 | 0.747 | 1.17 | 1.052 | 4342 | -- | -- |
| 190.34 | 0.643 | 6.5 | -0.508 | 1.12 | -1.25 | -0.149 | -- | 0.748 | 1.13 | 1.05 | 4351 | -- | -- |
| 184.57 | 0.633 | 6.5 | -0.916 | 1.11 | -1.51 | -- | -2.02 | 0.749 | 1.17 | 1.06 | 4352 | -- | -- |
| 180.71 | 0.626 | 6.51 | -0.283 | 1.13 | -1.46 | -- | -- | 0.924 | 1.21 | 1.298 | 15976 | -- | -- |
| 204.46 | 0.666 | 6.42 | -0.541 | -- | -2.29 | -- | -1.51 | 0.877 | -- | 1.1 | 4628 | -- | -- |
| 226.08 | 0.705 | 6.52 | -0.826 | 1.16 | -- | -0.153 | -- | 0.54 | 1.06 | -- | -- | -- | -- |
| 226.18 | 0.704 | 6.52 | -0.82 | 1.16 | -- | -- | -- | 0.541 | 1.04 | -- | -- | -- | -- |
| 207.3 | 0.671 | 6.42 | -0.371 | -- | -2.25 | -- | -- | 0.916 | -- | 1.196 | 4649 | -- | -- |
| 179.11 | 0.623 | 6.48 | -- | 1.19 | -1.4 | -- | -- | 0.966 | 1.05 | 1.06 | 17205 | -- | -- |
| 309.68 | 0.822 | 6.5 | -0.777 | -- | -- | -- | -- | 0.564 | -- | -- | -- | -- | -- |
| 243.91 | 0.731 | 6.5 | -- | 1.15 | -- | -- | -- | 0.633 | 1.01 | -- | -- | -- | -- |
| 210.61 | 0.676 | 6.41 | -- | -- | -2.34 | -- | -- | 0.963 | -- | 1.125 | 4637 | -- | -- |
| 325.59 | 0.842 | 6.48 | -- | -- | -- | -- | -- | 0.65 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.29 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 2 | 170.39 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 4 | 170.47 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 6 | 170.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 8 | 170.65 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 9 | 170.65 | humidity | 70 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 10 | 170.65 | humidity | 80 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 21 | 170.77 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 42 | 170.89 | humidity | 60 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 44 | 170.90 | humidity | 80 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 73 | 171.00 | humidity | 80 | 43200 | < th | dose dependent | sin | 19 | NA |
| 102 | 171.09 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 107 | 171.11 | radiation | 10 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 125 | 171.14 | radiation | 10 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 172 | 171.28 | humidity | 60 | 43200 | > th | dose independent | sin | 21 | NA |
| 254 | 171.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 366 | 171.78 | humidity | 70 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 504 | 172.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 539 | 172.11 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 548 | 172.13 | humidity | 70 | 43200 | < th | dose independent | sin | 15 | NA |
| 561 | 172.15 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 573 | 172.17 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 616 | 172.23 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 672 | 172.31 | humidity | 70 | 43200 | > th | dose independent | sin | 14 | NA |
| 734 | 172.40 | humidity | 60 | 43200 | < th | dose independent | sin | 19 | NA |
| 754 | 172.44 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 773 | 172.47 | humidity | 80 | 43200 | < th | dose dependent | no | NA | NA |
| 841 | 172.60 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 844 | 172.60 | humidity | 90 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 895 | 172.70 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 900 | 172.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 946 | 172.77 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 5 |