BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0241300 Os05g0241300|J075103P13
         (86 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0241300  Hypothetical protein                                118   8e-28

>Os05g0241300 Hypothetical protein
          Length = 86

 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 65/86 (75%)

Query: 1  MFLSGISPAVHHDLQPGGRSPYDGDDGDRTLVVLLTFGIFFSFVILYLVAGLIWXXXXXX 60
          MFLSGISPAVHHDLQPGGRSPYDGDDGDRTLVVLLTFGIFFSFVILYLVAGLIW      
Sbjct: 1  MFLSGISPAVHHDLQPGGRSPYDGDDGDRTLVVLLTFGIFFSFVILYLVAGLIWAVVITA 60

Query: 61 XXXXLSFLYLXXXXXXXXXXXLELPV 86
              LSFLYL           LELPV
Sbjct: 61 AAVVLSFLYLRVRRRRAAGGRLELPV 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.153    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,505,393
Number of extensions: 83682
Number of successful extensions: 213
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 1
Length of query: 86
Length of database: 17,035,801
Length adjustment: 56
Effective length of query: 30
Effective length of database: 14,111,817
Effective search space: 423354510
Effective search space used: 423354510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)