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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0241300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0384) R2 : 0.000103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0176 (0.0809) R2dN8 : 0.000134 R2N8 : 0.000103
σ : 0.723
deviance : 240.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.18 0.714 2.84 0.0278 0.14 -0.0601 -1.82 -2.4 0.0182 14.4 9.73 275 -- --
237.15 0.723 2.83 0.0207 0.231 0.056 0.488 -- 0.0244 14.1 4.759 1639 -- --
233.97 0.712 2.83 0.0464 0.135 -0.0763 -- -1.16 0.0662 15.6 17.06 175 -- --
237.31 0.717 2.83 0.047 0.0913 -0.124 -- -- 0.0144 15.5 15.18 209 -- --
233.9 0.712 2.82 0.0711 -- -0.171 -- -0.996 0.06 -- 17.07 208 -- --
237.28 0.722 2.83 0.0244 0.187 -- 0.47 -- 0.0227 14.6 -- -- -- --
237.96 0.722 2.83 0.0366 0.197 -- -- -- 0.0259 15.5 -- -- -- --
237.45 0.718 2.83 0.0154 -- -0.184 -- -- 0.0148 -- 14.03 227 -- --
237.25 0.717 2.83 -- 0.0926 -0.15 -- -- 0.0161 16 15.15 216 -- --
240.13 0.724 2.83 0.0283 -- -- -- -- 0.0207 -- -- -- -- --
237.99 0.722 2.83 -- 0.196 -- -- -- 0.0218 15.5 -- -- -- --
237.39 0.718 2.83 -- -- -0.203 -- -- 0.00365 -- 14.09 221 -- --
240.15 0.723 2.83 -- -- -- -- -- 0.0176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.45 atmosphere 1005.0 10 < th dose independent rect. 20 1
7 225.13 atmosphere 1000.0 90 < th dose independent rect. 13 1
8 225.15 atmosphere 1000.0 10 < th dose dependent rect. 14 1
16 225.21 wind 1.0 10 < th dose independent rect. 13 1
18 225.21 wind 1.0 10 < th dose dependent rect. 13 1
41 226.39 atmosphere 1005.0 10 < th dose dependent rect. 19 1
52 227.39 radiation 40.0 10 > th dose dependent rect. 14 1
93 227.77 humidity 90.0 10 > th dose dependent rect. 20 1
96 227.88 temperature 25.0 10 > th dose dependent rect. 22 1
97 227.99 humidity 80.0 90 > th dose independent rect. 18 1
100 228.20 temperature 30.0 30 < th dose independent rect. 23 23
103 228.36 humidity 80.0 10 > th dose independent rect. 19 1
110 228.55 atmosphere 1010.0 30 < th dose dependent rect. 22 1
126 228.68 humidity 90.0 10 > th dose dependent rect. 17 4
143 228.98 temperature 25.0 90 > th dose dependent rect. 21 2
147 229.12 wind 3.0 10 > th dose independent rect. 22 1
152 229.21 radiation 1.0 4320 < th dose dependent rect. 23 1
155 229.24 humidity 70.0 90 < th dose independent rect. 10 8
156 229.25 temperature 25.0 30 > th dose independent rect. 21 2
158 229.31 temperature 20.0 10 < th dose independent rect. 4 1
162 229.35 humidity 90.0 10 < th dose dependent rect. 22 1
173 229.49 humidity 90.0 10 < th dose independent rect. 22 1
177 229.51 wind 1.0 10 > th dose dependent rect. 22 1
180 229.54 wind 9.0 1440 < th dose independent rect. 23 1
181 229.54 temperature 10.0 1440 > th dose independent rect. 23 1
184 229.54 temperature 30.0 1440 < th dose independent rect. 23 1
188 229.54 humidity 50.0 1440 > th dose independent rect. 23 1
198 229.54 atmosphere 995.0 1440 > th dose independent rect. 23 1
199 229.54 radiation 1.0 1440 < th dose independent rect. 23 1
219 229.54 temperature 10.0 1440 > th dose independent rect. 24 23
232 229.57 radiation 40.0 43200 < th dose dependent rect. 23 1
234 229.59 temperature 20.0 30 > th dose independent rect. 3 1
236 229.60 atmosphere 1005.0 30 > th dose dependent rect. 22 1
237 229.61 wind 5.0 30 < th dose independent rect. 22 1
242 229.62 temperature 10.0 30 > th dose independent rect. 22 1
244 229.62 temperature 30.0 30 < th dose independent rect. 22 1
245 229.62 humidity 50.0 30 > th dose independent rect. 22 1
248 229.62 atmosphere 995.0 30 > th dose independent rect. 22 1
249 229.62 atmosphere 1010.0 30 < th dose independent rect. 22 1
251 229.62 radiation 1.0 30 < th dose independent rect. 22 1
256 229.62 precipitation 0.1 30 < th dose independent rect. 22 1
257 229.62 temperature 10.0 30 > th dose independent rect. 23 23
258 229.62 radiation 1.0 30 < th dose dependent rect. 22 1
264 229.62 precipitation 0.1 30 < th dose dependent rect. 22 1
269 229.64 wind 7.0 30 < th dose dependent rect. 22 1
272 229.65 humidity 50.0 30 > th dose dependent rect. 22 1
274 229.66 atmosphere 1005.0 30 > th dose independent rect. 22 1
285 229.75 precipitation 0.1 30 < th dose independent rect. 23 23
286 229.75 precipitation 0.1 30 < th dose dependent rect. 23 23
337 229.86 temperature 30.0 30 < th dose dependent rect. 22 1
340 229.88 atmosphere 995.0 30 > th dose independent rect. 23 23
344 229.92 wind 9.0 30 < th dose independent rect. 23 23
357 230.03 atmosphere 1005.0 10 > th dose independent rect. 3 1
361 230.12 wind 1.0 270 < th dose dependent rect. 2 1
364 230.17 wind 7.0 10 > th dose independent rect. 15 1
369 230.22 humidity 90.0 10 > th dose dependent rect. 8 13
376 230.27 humidity 70.0 90 < th dose independent rect. 7 11
411 230.35 radiation 40.0 10 > th dose independent rect. 14 1
457 230.45 precipitation 0.1 1440 < th dose independent rect. 23 1
458 230.45 precipitation 0.1 1440 < th dose dependent rect. 23 1
471 230.56 radiation 10.0 270 < th dose independent rect. 14 22
473 230.57 wind 1.0 270 < th dose independent rect. 2 1
482 230.62 temperature 25.0 10 < th dose dependent rect. 3 1
484 230.66 radiation 10.0 270 < th dose independent rect. 21 23
492 230.69 wind 7.0 10 > th dose dependent rect. 14 4
497 230.73 temperature 20.0 1440 > th dose independent rect. 2 2
513 230.80 radiation 10.0 270 < th dose independent rect. 7 12
517 230.82 temperature 20.0 1440 < th dose independent rect. 2 2
534 230.84 humidity 70.0 90 > th dose independent rect. 23 22
535 230.84 radiation 40.0 10 > th dose dependent sin 13 NA
540 230.85 humidity 70.0 90 > th dose independent rect. 9 11
548 230.91 radiation 20.0 720 > th dose independent rect. 6 1
566 230.93 atmosphere 1000.0 10 < th dose dependent rect. 13 7
589 231.04 wind 5.0 10 > th dose dependent rect. 15 1
600 231.08 atmosphere 1000.0 10 > th dose dependent rect. 3 1
604 231.10 wind 7.0 10 > th dose independent rect. 12 4
613 231.14 radiation 10.0 270 < th dose independent rect. 24 23
614 231.15 humidity 70.0 90 > th dose independent sin 23 NA
623 231.17 humidity 70.0 90 < th dose independent sin 0 NA
631 231.21 wind 1.0 270 < th dose independent rect. 13 1
639 231.23 radiation 10.0 270 < th dose independent rect. 11 23
646 231.27 radiation 10.0 270 < th dose independent no NA NA
658 231.32 humidity 70.0 90 > th dose independent rect. 7 13
669 231.36 radiation 20.0 720 < th dose independent rect. 11 1
681 231.41 temperature 30.0 90 < th dose independent rect. 19 23
685 231.43 radiation 10.0 270 < th dose independent sin 0 NA
687 231.43 temperature 15.0 30 > th dose dependent rect. 18 2
691 231.45 wind 1.0 720 < th dose independent rect. 8 1
694 231.46 humidity 60.0 90 < th dose independent rect. 18 1
709 231.47 humidity 60.0 90 < th dose dependent rect. 18 1
725 231.49 humidity 70.0 90 > th dose independent rect. 23 18
751 231.54 humidity 70.0 90 < th dose independent rect. 10 21
753 231.54 wind 9.0 4320 > th dose dependent rect. 17 2
772 231.55 humidity 90.0 30 < th dose dependent rect. 21 21
778 231.57 humidity 70.0 90 > th dose independent rect. 4 16
790 231.59 temperature 20.0 90 < th dose independent rect. 2 2
806 231.60 wind 7.0 10 > th dose dependent rect. 12 6
837 231.63 humidity 70.0 270 < th dose independent rect. 11 1
838 231.63 wind 5.0 10 < th dose independent rect. 18 2
841 231.63 radiation 10.0 270 < th dose independent rect. 5 23
851 231.64 radiation 20.0 720 > th dose dependent rect. 6 1
867 231.65 wind 5.0 90 > th dose independent rect. 6 1
872 231.65 wind 5.0 90 > th dose dependent rect. 6 1
873 231.65 wind 5.0 90 > th dose dependent rect. 4 3
885 231.67 radiation 20.0 90 > th dose independent rect. 6 1
900 231.67 radiation 20.0 90 > th dose dependent rect. 6 1
930 231.70 humidity 70.0 90 > th dose independent rect. 23 16
961 231.74 temperature 20.0 30 > th dose independent rect. 18 2
976 231.77 humidity 50.0 30 > th dose dependent rect. 23 23
983 231.79 wind 1.0 30 > th dose independent rect. 2 21
989 231.80 atmosphere 1000.0 270 < th dose dependent rect. 10 1
998 231.82 humidity 70.0 90 > th dose independent rect. 4 13