BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0232200 Os05g0232200|AK071646
         (383 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0232200  Conserved hypothetical protein                      698   0.0  

>Os05g0232200 Conserved hypothetical protein
          Length = 383

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/383 (90%), Positives = 348/383 (90%)

Query: 1   MVMLLYNADRSLISQAELKMKAVVESGTMDVDFSLDNGGSIILRLQFLLSDEDRRRVQEM 60
           MVMLLYNADRSLISQAELKMKAVVESGTMDVDFSLDNGGSIILRLQFLLSDEDRRRVQEM
Sbjct: 1   MVMLLYNADRSLISQAELKMKAVVESGTMDVDFSLDNGGSIILRLQFLLSDEDRRRVQEM 60

Query: 61  RNSAVKRKQQELLSDGYVLSQDSLLSKQVENISNISREGDESSVRKSMSLDDLQEKAVFS 120
           RNSAVKRKQQELLSDGYVLSQDSLLSKQVENISNISREGDESSVRKSMSLDDLQEKAVFS
Sbjct: 61  RNSAVKRKQQELLSDGYVLSQDSLLSKQVENISNISREGDESSVRKSMSLDDLQEKAVFS 120

Query: 121 AIIVDPQMKDTKESPEQSGSNSAVQKMISAFQSSSPQDLTRIXXXXXXXXXXXXXXNFTQ 180
           AIIVDPQMKDTKESPEQSGSNSAVQKMISAFQSSSPQDLTRI              NFTQ
Sbjct: 121 AIIVDPQMKDTKESPEQSGSNSAVQKMISAFQSSSPQDLTRIKSESSLKGLSASSENFTQ 180

Query: 181 XXXXXXXXXLATQDVSGHTEAGLVAGTSGKMQLPPGDKSFSNKRSNATEQQAVLSTTSEG 240
                    LATQDVSGHTEAGLVAGTSGKMQLPPGDKSFSNKRSNATEQQAVLSTTSEG
Sbjct: 181 SSSDKSSSSLATQDVSGHTEAGLVAGTSGKMQLPPGDKSFSNKRSNATEQQAVLSTTSEG 240

Query: 241 RIRRLFREKDLDNSEMVITVQNXXXXXXXXXXXXAAIGPYSLEHMHPHVCITTASRQLRE 300
           RIRRLFREKDLDNSEMVITVQN            AAIGPYSLEHMHPHVCITTASRQLRE
Sbjct: 241 RIRRLFREKDLDNSEMVITVQNRSKKRSMPKRRRAAIGPYSLEHMHPHVCITTASRQLRE 300

Query: 301 LVELEPPLDSFVFVGQVDIKRPNVRGGASMQDQGTSDSKTKNEMVSARGDDHGFPILDGR 360
           LVELEPPLDSFVFVGQVDIKRPNVRGGASMQDQGTSDSKTKNEMVSARGDDHGFPILDGR
Sbjct: 301 LVELEPPLDSFVFVGQVDIKRPNVRGGASMQDQGTSDSKTKNEMVSARGDDHGFPILDGR 360

Query: 361 LINQAMRVVIVIIACGAIFLNNR 383
           LINQAMRVVIVIIACGAIFLNNR
Sbjct: 361 LINQAMRVVIVIIACGAIFLNNR 383



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,351,679
Number of extensions: 360192
Number of successful extensions: 739
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)